Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24700 and EX31_RS24705 are separated by 591 nucleotides EX31_RS24705 and EX31_RS24710 are separated by 76 nucleotides
EX31_RS24700: EX31_RS24700 - PTS mannose transporter subunit IIAB, at 707,483 to 708,445
_RS24700
EX31_RS24705: EX31_RS24705 - TerC family protein, at 709,037 to 710,596
_RS24705
EX31_RS24710: EX31_RS24710 - EAL domain-containing protein, at 710,673 to 712,265
_RS24710
Position (kb) 709
710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 708.167 kb on - strand, within EX31_RS24700 at 708.167 kb on - strand, within EX31_RS24700 at 708.346 kb on + strand, within EX31_RS24700 at 708.431 kb on - strand at 708.433 kb on + strand at 708.433 kb on + strand at 708.434 kb on - strand at 708.434 kb on - strand at 708.440 kb on - strand at 708.440 kb on - strand at 708.450 kb on + strand at 708.463 kb on - strand at 708.463 kb on - strand at 708.463 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.480 kb on - strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.487 kb on + strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.488 kb on - strand at 708.491 kb on + strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.492 kb on - strand at 708.494 kb on - strand at 708.589 kb on - strand at 708.633 kb on - strand at 708.682 kb on + strand at 708.683 kb on - strand at 708.712 kb on - strand at 708.721 kb on + strand at 708.721 kb on + strand at 708.721 kb on + strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.722 kb on - strand at 708.728 kb on + strand at 708.729 kb on - strand at 708.770 kb on + strand at 708.770 kb on + strand at 708.771 kb on - strand at 708.771 kb on - strand at 708.771 kb on - strand at 708.783 kb on + strand at 708.784 kb on - strand at 708.784 kb on - strand at 708.800 kb on + strand at 708.800 kb on + strand at 708.814 kb on + strand at 708.814 kb on + strand at 708.834 kb on + strand at 708.958 kb on - strand at 709.016 kb on + strand at 709.127 kb on - strand at 709.127 kb on - strand at 709.168 kb on + strand at 709.169 kb on - strand at 709.178 kb on - strand at 709.212 kb on + strand, within EX31_RS24705 at 709.212 kb on + strand, within EX31_RS24705 at 709.212 kb on + strand, within EX31_RS24705 at 709.213 kb on - strand, within EX31_RS24705 at 709.329 kb on + strand, within EX31_RS24705 at 709.599 kb on + strand, within EX31_RS24705 at 709.599 kb on + strand, within EX31_RS24705 at 709.599 kb on + strand, within EX31_RS24705 at 709.599 kb on + strand, within EX31_RS24705 at 709.599 kb on + strand, within EX31_RS24705 at 709.617 kb on + strand, within EX31_RS24705 at 709.674 kb on - strand, within EX31_RS24705 at 709.777 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.789 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.851 kb on + strand, within EX31_RS24705 at 709.852 kb on - strand, within EX31_RS24705 at 709.852 kb on - strand, within EX31_RS24705 at 710.014 kb on + strand, within EX31_RS24705 at 710.197 kb on + strand, within EX31_RS24705 at 710.338 kb on + strand, within EX31_RS24705 at 710.338 kb on + strand, within EX31_RS24705 at 710.350 kb on + strand, within EX31_RS24705 at 710.755 kb on - strand at 710.755 kb on - strand at 710.755 kb on - strand at 710.755 kb on - strand at 710.776 kb on + strand at 710.777 kb on - strand at 710.816 kb on - strand at 710.820 kb on + strand at 710.821 kb on - strand at 710.860 kb on - strand, within EX31_RS24710 at 710.984 kb on - strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.069 kb on + strand, within EX31_RS24710 at 711.070 kb on - strand, within EX31_RS24710 at 711.171 kb on - strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.194 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.197 kb on + strand, within EX31_RS24710 at 711.198 kb on - strand, within EX31_RS24710 at 711.205 kb on + strand, within EX31_RS24710 at 711.228 kb on + strand, within EX31_RS24710 at 711.309 kb on - strand, within EX31_RS24710 at 711.309 kb on - strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.374 kb on + strand, within EX31_RS24710 at 711.375 kb on - strand, within EX31_RS24710 at 711.396 kb on - strand, within EX31_RS24710 at 711.396 kb on - strand, within EX31_RS24710 at 711.399 kb on - strand, within EX31_RS24710 at 711.399 kb on - strand, within EX31_RS24710 at 711.420 kb on - strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.487 kb on + strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.488 kb on - strand, within EX31_RS24710 at 711.489 kb on + strand, within EX31_RS24710 at 711.489 kb on + strand, within EX31_RS24710 at 711.490 kb on - strand, within EX31_RS24710 at 711.490 kb on - strand, within EX31_RS24710 at 711.584 kb on + strand, within EX31_RS24710 at 711.585 kb on - strand, within EX31_RS24710
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 708,167 - EX31_RS24700 0.71 +0.1 708,167 - EX31_RS24700 0.71 -0.0 708,346 + EX31_RS24700 0.90 +2.1 708,431 - -1.5 708,433 + -0.0 708,433 + +1.1 708,434 - -0.5 708,434 - +0.1 708,440 - -2.1 708,440 - +1.1 708,450 + +0.5 708,463 - +0.2 708,463 - +2.4 708,463 - +0.2 708,480 - +0.4 708,480 - +1.1 708,480 - -2.5 708,480 - +0.6 708,487 + +0.1 708,487 + +0.7 708,487 + -2.1 708,487 + -2.1 708,487 + +1.4 708,488 - -2.5 708,488 - -0.9 708,488 - +1.4 708,488 - -0.9 708,488 - +1.7 708,488 - -0.2 708,488 - +0.7 708,488 - +0.3 708,488 - +0.1 708,488 - +2.1 708,488 - +1.8 708,488 - -1.6 708,488 - +2.7 708,488 - +2.0 708,491 + -1.0 708,492 - +0.5 708,492 - -0.6 708,492 - -2.8 708,492 - -1.5 708,494 - -0.2 708,589 - +0.5 708,633 - -2.1 708,682 + +0.1 708,683 - +0.4 708,712 - -0.0 708,721 + +1.3 708,721 + +1.7 708,721 + -1.1 708,722 - -0.2 708,722 - +2.2 708,722 - +0.9 708,722 - +0.1 708,722 - +0.5 708,722 - +1.1 708,722 - +1.8 708,722 - -0.1 708,728 + +1.8 708,729 - -0.5 708,770 + +1.4 708,770 + -0.9 708,771 - +0.1 708,771 - +1.5 708,771 - -0.4 708,783 + +2.7 708,784 - -2.5 708,784 - +1.1 708,800 + +1.6 708,800 + +0.7 708,814 + +1.8 708,814 + -1.9 708,834 + -0.4 708,958 - +0.1 709,016 + +0.5 709,127 - +0.1 709,127 - +1.1 709,168 + -0.2 709,169 - +2.4 709,178 - +2.3 709,212 + EX31_RS24705 0.11 +1.3 709,212 + EX31_RS24705 0.11 -1.7 709,212 + EX31_RS24705 0.11 -2.6 709,213 - EX31_RS24705 0.11 +3.4 709,329 + EX31_RS24705 0.19 +1.9 709,599 + EX31_RS24705 0.36 +1.1 709,599 + EX31_RS24705 0.36 -0.7 709,599 + EX31_RS24705 0.36 +0.5 709,599 + EX31_RS24705 0.36 -0.4 709,599 + EX31_RS24705 0.36 -2.5 709,617 + EX31_RS24705 0.37 +0.1 709,674 - EX31_RS24705 0.41 -0.5 709,777 + EX31_RS24705 0.47 -0.0 709,789 + EX31_RS24705 0.48 +0.8 709,789 + EX31_RS24705 0.48 +0.7 709,789 + EX31_RS24705 0.48 +1.1 709,851 + EX31_RS24705 0.52 -0.3 709,851 + EX31_RS24705 0.52 +1.1 709,851 + EX31_RS24705 0.52 +0.1 709,851 + EX31_RS24705 0.52 +2.2 709,851 + EX31_RS24705 0.52 +0.6 709,851 + EX31_RS24705 0.52 +0.9 709,851 + EX31_RS24705 0.52 -0.2 709,851 + EX31_RS24705 0.52 +0.8 709,851 + EX31_RS24705 0.52 -0.1 709,851 + EX31_RS24705 0.52 -0.6 709,852 - EX31_RS24705 0.52 +1.1 709,852 - EX31_RS24705 0.52 -1.2 710,014 + EX31_RS24705 0.63 -1.7 710,197 + EX31_RS24705 0.74 -0.1 710,338 + EX31_RS24705 0.83 +0.6 710,338 + EX31_RS24705 0.83 -1.4 710,350 + EX31_RS24705 0.84 -0.1 710,755 - -0.2 710,755 - +0.8 710,755 - +1.6 710,755 - -0.4 710,776 + +0.9 710,777 - +1.5 710,816 - +1.1 710,820 + -0.5 710,821 - +1.5 710,860 - EX31_RS24710 0.12 -0.5 710,984 - EX31_RS24710 0.20 +1.7 711,069 + EX31_RS24710 0.25 +2.0 711,069 + EX31_RS24710 0.25 -1.2 711,069 + EX31_RS24710 0.25 +0.3 711,070 - EX31_RS24710 0.25 -1.3 711,171 - EX31_RS24710 0.31 -0.5 711,194 + EX31_RS24710 0.33 -1.2 711,194 + EX31_RS24710 0.33 -1.5 711,194 + EX31_RS24710 0.33 +0.1 711,194 + EX31_RS24710 0.33 -1.2 711,194 + EX31_RS24710 0.33 +0.1 711,194 + EX31_RS24710 0.33 -1.9 711,197 + EX31_RS24710 0.33 +1.1 711,197 + EX31_RS24710 0.33 +0.5 711,197 + EX31_RS24710 0.33 -0.6 711,198 - EX31_RS24710 0.33 +0.5 711,205 + EX31_RS24710 0.33 +1.1 711,228 + EX31_RS24710 0.35 +0.1 711,309 - EX31_RS24710 0.40 -0.5 711,309 - EX31_RS24710 0.40 +1.7 711,374 + EX31_RS24710 0.44 +1.3 711,374 + EX31_RS24710 0.44 -1.2 711,374 + EX31_RS24710 0.44 -1.7 711,374 + EX31_RS24710 0.44 +1.8 711,375 - EX31_RS24710 0.44 +0.8 711,396 - EX31_RS24710 0.45 +1.1 711,396 - EX31_RS24710 0.45 +0.4 711,399 - EX31_RS24710 0.46 -0.5 711,399 - EX31_RS24710 0.46 +0.4 711,420 - EX31_RS24710 0.47 -2.2 711,487 + EX31_RS24710 0.51 -0.2 711,487 + EX31_RS24710 0.51 +0.5 711,487 + EX31_RS24710 0.51 +0.7 711,487 + EX31_RS24710 0.51 +0.5 711,487 + EX31_RS24710 0.51 +1.1 711,488 - EX31_RS24710 0.51 +2.1 711,488 - EX31_RS24710 0.51 -0.9 711,488 - EX31_RS24710 0.51 +0.5 711,488 - EX31_RS24710 0.51 +1.1 711,489 + EX31_RS24710 0.51 -0.9 711,489 + EX31_RS24710 0.51 +1.1 711,490 - EX31_RS24710 0.51 -0.5 711,490 - EX31_RS24710 0.51 +1.7 711,584 + EX31_RS24710 0.57 +1.4 711,585 - EX31_RS24710 0.57 -0.9
Or see this region's nucleotide sequence