Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24195 and EX31_RS24200 are separated by 124 nucleotides EX31_RS24200 and EX31_RS24205 are separated by 51 nucleotides EX31_RS24205 and EX31_RS24210 are separated by 72 nucleotides EX31_RS24210 and EX31_RS25665 are separated by 568 nucleotides
EX31_RS24195: EX31_RS24195 - membrane protein, at 607,896 to 608,405
_RS24195
EX31_RS24200: EX31_RS24200 - hypothetical protein, at 608,530 to 608,805
_RS24200
EX31_RS24205: EX31_RS24205 - hypothetical protein, at 608,857 to 609,117
_RS24205
EX31_RS24210: EX31_RS24210 - hypothetical protein, at 609,190 to 609,402
_RS24210
EX31_RS25665: EX31_RS25665 - DUF2502 domain-containing protein, at 609,971 to 610,336
_RS25665
Position (kb) 609
610 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 608.193 kb on + strand, within EX31_RS24195 at 608.193 kb on + strand, within EX31_RS24195 at 608.193 kb on + strand, within EX31_RS24195 at 608.194 kb on - strand, within EX31_RS24195 at 608.194 kb on - strand, within EX31_RS24195 at 608.194 kb on - strand, within EX31_RS24195 at 608.195 kb on + strand, within EX31_RS24195 at 608.196 kb on - strand, within EX31_RS24195 at 608.248 kb on + strand, within EX31_RS24195 at 608.248 kb on + strand, within EX31_RS24195 at 608.248 kb on + strand, within EX31_RS24195 at 608.248 kb on + strand, within EX31_RS24195 at 608.248 kb on + strand, within EX31_RS24195 at 608.249 kb on - strand, within EX31_RS24195 at 608.249 kb on - strand, within EX31_RS24195 at 608.328 kb on + strand, within EX31_RS24195 at 608.338 kb on - strand, within EX31_RS24195 at 608.372 kb on + strand at 608.373 kb on - strand at 608.392 kb on + strand at 608.392 kb on + strand at 608.393 kb on - strand at 608.393 kb on - strand at 608.404 kb on - strand at 608.412 kb on + strand at 608.459 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.526 kb on + strand at 608.527 kb on - strand at 608.602 kb on - strand, within EX31_RS24200 at 608.610 kb on + strand, within EX31_RS24200 at 608.610 kb on + strand, within EX31_RS24200 at 608.610 kb on + strand, within EX31_RS24200 at 608.610 kb on + strand, within EX31_RS24200 at 608.610 kb on + strand, within EX31_RS24200 at 608.611 kb on - strand, within EX31_RS24200 at 608.614 kb on + strand, within EX31_RS24200 at 608.614 kb on + strand, within EX31_RS24200 at 608.633 kb on + strand, within EX31_RS24200 at 608.690 kb on + strand, within EX31_RS24200 at 608.717 kb on + strand, within EX31_RS24200 at 608.718 kb on - strand, within EX31_RS24200 at 608.795 kb on + strand at 608.795 kb on + strand at 608.885 kb on - strand, within EX31_RS24205 at 608.909 kb on + strand, within EX31_RS24205 at 608.910 kb on - strand, within EX31_RS24205 at 608.970 kb on + strand, within EX31_RS24205 at 609.090 kb on + strand, within EX31_RS24205 at 609.115 kb on + strand at 609.115 kb on + strand at 609.115 kb on + strand at 609.132 kb on + strand at 609.149 kb on + strand at 609.149 kb on + strand at 609.268 kb on + strand, within EX31_RS24210 at 609.433 kb on + strand at 609.433 kb on + strand at 609.448 kb on + strand at 609.449 kb on - strand at 609.465 kb on + strand at 609.465 kb on + strand at 609.465 kb on + strand at 609.466 kb on - strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.467 kb on + strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.468 kb on - strand at 609.471 kb on + strand at 609.471 kb on + strand at 609.472 kb on - strand at 609.553 kb on - strand at 609.575 kb on + strand at 609.575 kb on + strand at 609.575 kb on + strand at 609.576 kb on - strand at 609.576 kb on - strand at 609.770 kb on - strand at 609.780 kb on + strand at 609.823 kb on + strand at 609.868 kb on - strand at 609.868 kb on - strand at 609.987 kb on + strand at 609.987 kb on + strand at 610.051 kb on + strand, within EX31_RS25665 at 610.051 kb on + strand, within EX31_RS25665 at 610.051 kb on + strand, within EX31_RS25665 at 610.100 kb on + strand, within EX31_RS25665 at 610.100 kb on + strand, within EX31_RS25665 at 610.209 kb on - strand, within EX31_RS25665
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 608,193 + EX31_RS24195 0.58 -1.4 608,193 + EX31_RS24195 0.58 +1.7 608,193 + EX31_RS24195 0.58 +1.4 608,194 - EX31_RS24195 0.58 -1.2 608,194 - EX31_RS24195 0.58 -0.9 608,194 - EX31_RS24195 0.58 +2.1 608,195 + EX31_RS24195 0.59 +2.5 608,196 - EX31_RS24195 0.59 +0.9 608,248 + EX31_RS24195 0.69 +2.8 608,248 + EX31_RS24195 0.69 +1.1 608,248 + EX31_RS24195 0.69 +0.8 608,248 + EX31_RS24195 0.69 +1.2 608,248 + EX31_RS24195 0.69 -1.2 608,249 - EX31_RS24195 0.69 +0.5 608,249 - EX31_RS24195 0.69 -1.4 608,328 + EX31_RS24195 0.85 +0.2 608,338 - EX31_RS24195 0.87 +1.1 608,372 + -0.0 608,373 - -0.5 608,392 + -2.6 608,392 + +0.6 608,393 - +0.1 608,393 - -0.5 608,404 - +0.7 608,412 + +0.5 608,459 + -1.2 608,526 + +1.0 608,526 + +0.8 608,526 + -0.5 608,526 + -0.3 608,526 + +0.5 608,526 + -0.1 608,526 + +2.5 608,527 - +0.9 608,602 - EX31_RS24200 0.26 +0.4 608,610 + EX31_RS24200 0.29 -2.1 608,610 + EX31_RS24200 0.29 +1.8 608,610 + EX31_RS24200 0.29 -0.6 608,610 + EX31_RS24200 0.29 +0.4 608,610 + EX31_RS24200 0.29 +0.7 608,611 - EX31_RS24200 0.29 -0.1 608,614 + EX31_RS24200 0.30 -0.1 608,614 + EX31_RS24200 0.30 +2.1 608,633 + EX31_RS24200 0.37 +0.5 608,690 + EX31_RS24200 0.58 +0.8 608,717 + EX31_RS24200 0.68 +2.5 608,718 - EX31_RS24200 0.68 -0.7 608,795 + -1.8 608,795 + -0.2 608,885 - EX31_RS24205 0.11 +1.8 608,909 + EX31_RS24205 0.20 +0.1 608,910 - EX31_RS24205 0.20 +0.1 608,970 + EX31_RS24205 0.43 +0.1 609,090 + EX31_RS24205 0.89 +0.6 609,115 + -0.9 609,115 + +0.6 609,115 + -0.6 609,132 + +0.5 609,149 + +2.8 609,149 + +0.4 609,268 + EX31_RS24210 0.37 +1.4 609,433 + +2.1 609,433 + +0.1 609,448 + -0.5 609,449 - -0.2 609,465 + -1.2 609,465 + -1.5 609,465 + +0.6 609,466 - +1.1 609,467 + +1.8 609,467 + +1.1 609,467 + +0.4 609,467 + +1.6 609,467 + +0.9 609,467 + -0.5 609,467 + +0.7 609,467 + -0.1 609,467 + +0.7 609,467 + -0.8 609,467 + -0.2 609,467 + -1.7 609,467 + -0.3 609,467 + -0.3 609,467 + +0.9 609,467 + +0.1 609,468 - +0.3 609,468 - +2.9 609,468 - -0.9 609,468 - +1.5 609,468 - +1.1 609,468 - -1.5 609,468 - +2.1 609,471 + +0.4 609,471 + -0.8 609,472 - +0.9 609,553 - +0.8 609,575 + +1.1 609,575 + +1.6 609,575 + -0.9 609,576 - +1.1 609,576 - +1.1 609,770 - -0.5 609,780 + +1.6 609,823 + +0.1 609,868 - +0.3 609,868 - +1.1 609,987 + +1.4 609,987 + +1.1 610,051 + EX31_RS25665 0.22 -1.2 610,051 + EX31_RS25665 0.22 +0.1 610,051 + EX31_RS25665 0.22 -1.4 610,100 + EX31_RS25665 0.35 +1.3 610,100 + EX31_RS25665 0.35 +0.1 610,209 - EX31_RS25665 0.65 +0.5
Or see this region's nucleotide sequence