Strain Fitness in Rahnella sp. WP5 around EX31_RS23155

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23150 and EX31_RS23155 are separated by 267 nucleotidesEX31_RS23155 and EX31_RS23160 are separated by 59 nucleotidesEX31_RS23160 and EX31_RS23165 overlap by 4 nucleotides EX31_RS23150: EX31_RS23150 - leucine--tRNA ligase, at 390,919 to 393,501 _RS23150 EX31_RS23155: EX31_RS23155 - zinc ribbon-containing protein, at 393,769 to 394,269 _RS23155 EX31_RS23160: EX31_RS23160 - amino acid ABC transporter ATP-binding protein, at 394,329 to 395,054 _RS23160 EX31_RS23165: EX31_RS23165 - glutamate/aspartate ABC transporter permease GltK, at 395,051 to 395,728 _RS23165 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 393.579 kb on - strandat 393.649 kb on + strandat 393.649 kb on + strandat 393.649 kb on + strandat 393.650 kb on - strandat 393.656 kb on - strandat 393.677 kb on + strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.703 kb on - strandat 393.708 kb on + strandat 393.709 kb on - strandat 393.713 kb on + strandat 393.745 kb on + strandat 393.768 kb on + strandat 393.768 kb on + strandat 393.768 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.777 kb on + strandat 393.780 kb on + strandat 393.780 kb on + strandat 393.920 kb on + strand, within EX31_RS23155at 393.920 kb on + strand, within EX31_RS23155at 393.960 kb on + strand, within EX31_RS23155at 393.961 kb on - strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.964 kb on + strand, within EX31_RS23155at 393.965 kb on - strand, within EX31_RS23155at 393.965 kb on - strand, within EX31_RS23155at 394.032 kb on + strand, within EX31_RS23155at 394.062 kb on + strand, within EX31_RS23155at 394.126 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.195 kb on + strand, within EX31_RS23155at 394.196 kb on - strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.197 kb on + strand, within EX31_RS23155at 394.215 kb on + strand, within EX31_RS23155at 394.379 kb on + strandat 394.398 kb on - strandat 394.411 kb on - strand, within EX31_RS23160at 394.496 kb on + strand, within EX31_RS23160at 394.497 kb on - strand, within EX31_RS23160at 394.520 kb on + strand, within EX31_RS23160at 394.521 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.599 kb on - strand, within EX31_RS23160at 394.983 kb on - strandat 395.024 kb on - strandat 395.107 kb on + strandat 395.108 kb on - strandat 395.115 kb on + strandat 395.115 kb on + strandat 395.116 kb on - strandat 395.116 kb on - strandat 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.119 kb on + strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.120 kb on - strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.173 kb on + strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.174 kb on - strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.211 kb on + strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.212 kb on - strand, within EX31_RS23165at 395.235 kb on - strand, within EX31_RS23165

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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393,579 - +0.1
393,649 + +0.3
393,649 + +0.5
393,649 + +0.2
393,650 - +1.9
393,656 - -0.9
393,677 + +0.7
393,703 - -0.9
393,703 - +2.4
393,703 - -1.2
393,703 - +2.7
393,708 + +1.1
393,709 - +0.1
393,713 + -1.0
393,745 + +0.3
393,768 + -0.6
393,768 + +0.3
393,768 + +1.1
393,777 + -0.4
393,777 + +0.4
393,777 + +0.1
393,777 + -0.1
393,777 + +0.2
393,780 + -0.1
393,780 + -1.2
393,920 + EX31_RS23155 0.30 -0.7
393,920 + EX31_RS23155 0.30 +0.6
393,960 + EX31_RS23155 0.38 +0.8
393,961 - EX31_RS23155 0.38 +0.7
393,964 + EX31_RS23155 0.39 +0.7
393,964 + EX31_RS23155 0.39 +0.8
393,964 + EX31_RS23155 0.39 +0.1
393,965 - EX31_RS23155 0.39 -0.6
393,965 - EX31_RS23155 0.39 -0.9
394,032 + EX31_RS23155 0.52 +1.1
394,062 + EX31_RS23155 0.58 -0.4
394,126 + EX31_RS23155 0.71 -0.9
394,195 + EX31_RS23155 0.85 +0.9
394,195 + EX31_RS23155 0.85 +1.5
394,195 + EX31_RS23155 0.85 -1.7
394,195 + EX31_RS23155 0.85 +0.4
394,195 + EX31_RS23155 0.85 +1.7
394,195 + EX31_RS23155 0.85 -1.4
394,195 + EX31_RS23155 0.85 -0.7
394,196 - EX31_RS23155 0.85 +0.5
394,197 + EX31_RS23155 0.85 +2.1
394,197 + EX31_RS23155 0.85 +1.7
394,197 + EX31_RS23155 0.85 +0.7
394,197 + EX31_RS23155 0.85 +0.3
394,215 + EX31_RS23155 0.89 -0.1
394,379 + -0.4
394,398 - -0.0
394,411 - EX31_RS23160 0.11 -0.1
394,496 + EX31_RS23160 0.23 -2.3
394,497 - EX31_RS23160 0.23 +0.4
394,520 + EX31_RS23160 0.26 -1.2
394,521 - EX31_RS23160 0.26 -1.7
394,599 - EX31_RS23160 0.37 +0.3
394,599 - EX31_RS23160 0.37 +0.3
394,983 - +1.1
395,024 - -0.7
395,107 + -0.9
395,108 - +0.3
395,115 + -0.3
395,115 + -0.1
395,116 - +0.6
395,116 - +1.1
395,119 + EX31_RS23165 0.10 -1.2
395,119 + EX31_RS23165 0.10 +1.3
395,119 + EX31_RS23165 0.10 -0.4
395,119 + EX31_RS23165 0.10 +0.1
395,119 + EX31_RS23165 0.10 -0.9
395,119 + EX31_RS23165 0.10 -0.1
395,119 + EX31_RS23165 0.10 +2.3
395,119 + EX31_RS23165 0.10 -1.2
395,119 + EX31_RS23165 0.10 +0.1
395,120 - EX31_RS23165 0.10 +1.1
395,120 - EX31_RS23165 0.10 +0.1
395,120 - EX31_RS23165 0.10 -1.1
395,120 - EX31_RS23165 0.10 +1.6
395,173 + EX31_RS23165 0.18 -1.4
395,173 + EX31_RS23165 0.18 -0.0
395,173 + EX31_RS23165 0.18 +0.9
395,173 + EX31_RS23165 0.18 +0.1
395,173 + EX31_RS23165 0.18 +0.9
395,174 - EX31_RS23165 0.18 +0.6
395,174 - EX31_RS23165 0.18 -0.2
395,174 - EX31_RS23165 0.18 +0.3
395,174 - EX31_RS23165 0.18 +1.6
395,174 - EX31_RS23165 0.18 +0.1
395,174 - EX31_RS23165 0.18 -2.2
395,211 + EX31_RS23165 0.24 +0.6
395,211 + EX31_RS23165 0.24 -0.7
395,212 - EX31_RS23165 0.24 -2.4
395,212 - EX31_RS23165 0.24 +0.1
395,212 - EX31_RS23165 0.24 -0.5
395,212 - EX31_RS23165 0.24 +0.1
395,235 - EX31_RS23165 0.27 +0.6

Or see this region's nucleotide sequence