Strain Fitness in Rahnella sp. WP5 around EX31_RS21450

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21440 and EX31_RS21445 are separated by 103 nucleotidesEX31_RS21445 and EX31_RS21450 are separated by 57 nucleotidesEX31_RS21450 and EX31_RS21455 are separated by 106 nucleotides EX31_RS21440: EX31_RS21440 - arginine exporter ArgO, at 31,395 to 32,012 _RS21440 EX31_RS21445: EX31_RS21445 - oxidative stress defense protein, at 32,116 to 32,862 _RS21445 EX31_RS21450: EX31_RS21450 - SDR family oxidoreductase, at 32,920 to 33,762 _RS21450 EX31_RS21455: EX31_RS21455 - LysR family transcriptional regulator, at 33,869 to 34,777 _RS21455 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 31.964 kb on + strandat 31.964 kb on + strandat 31.964 kb on + strandat 31.964 kb on + strandat 31.964 kb on + strandat 31.964 kb on + strandat 31.964 kb on + strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.981 kb on + strandat 31.981 kb on + strandat 31.981 kb on + strandat 31.981 kb on + strandat 32.005 kb on + strandat 32.023 kb on + strandat 32.029 kb on + strandat 32.029 kb on + strandat 32.029 kb on + strandat 32.030 kb on - strandat 32.041 kb on + strandat 32.049 kb on + strandat 32.049 kb on + strandat 32.049 kb on + strandat 32.049 kb on + strandat 32.049 kb on + strandat 32.049 kb on + strandat 32.050 kb on - strandat 32.050 kb on - strandat 32.050 kb on - strandat 32.050 kb on - strandat 32.054 kb on + strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.079 kb on - strandat 32.079 kb on - strandat 32.079 kb on - strandat 32.079 kb on - strandat 32.079 kb on - strandat 32.079 kb on - strandat 32.082 kb on + strandat 32.082 kb on + strandat 32.082 kb on + strandat 32.082 kb on + strandat 32.082 kb on + strandat 32.083 kb on - strandat 32.083 kb on - strandat 32.083 kb on - strandat 32.104 kb on - strandat 32.138 kb on + strandat 32.335 kb on + strand, within EX31_RS21445at 32.335 kb on + strand, within EX31_RS21445at 32.336 kb on - strand, within EX31_RS21445at 32.336 kb on - strand, within EX31_RS21445at 32.398 kb on - strand, within EX31_RS21445at 32.410 kb on + strand, within EX31_RS21445at 32.410 kb on + strand, within EX31_RS21445at 32.410 kb on + strand, within EX31_RS21445at 32.411 kb on - strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.412 kb on + strand, within EX31_RS21445at 32.413 kb on - strand, within EX31_RS21445at 32.413 kb on - strand, within EX31_RS21445at 32.413 kb on - strand, within EX31_RS21445at 32.413 kb on - strand, within EX31_RS21445at 32.416 kb on + strand, within EX31_RS21445at 32.416 kb on + strand, within EX31_RS21445at 32.416 kb on + strand, within EX31_RS21445at 32.416 kb on + strand, within EX31_RS21445at 32.416 kb on + strand, within EX31_RS21445at 32.417 kb on - strand, within EX31_RS21445at 32.697 kb on + strand, within EX31_RS21445at 32.697 kb on + strand, within EX31_RS21445at 32.697 kb on + strand, within EX31_RS21445at 32.697 kb on + strand, within EX31_RS21445at 32.698 kb on - strand, within EX31_RS21445at 32.698 kb on - strand, within EX31_RS21445at 32.701 kb on + strand, within EX31_RS21445at 32.724 kb on + strand, within EX31_RS21445at 32.724 kb on + strand, within EX31_RS21445at 32.724 kb on + strand, within EX31_RS21445at 32.724 kb on + strand, within EX31_RS21445at 32.724 kb on + strand, within EX31_RS21445at 32.725 kb on - strand, within EX31_RS21445at 32.725 kb on - strand, within EX31_RS21445at 32.725 kb on - strand, within EX31_RS21445at 32.725 kb on - strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.728 kb on + strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.729 kb on - strand, within EX31_RS21445at 32.730 kb on + strand, within EX31_RS21445at 32.730 kb on + strand, within EX31_RS21445at 32.731 kb on - strand, within EX31_RS21445at 32.731 kb on - strand, within EX31_RS21445at 32.773 kb on + strand, within EX31_RS21445at 32.774 kb on - strand, within EX31_RS21445at 32.787 kb on + strand, within EX31_RS21445at 32.787 kb on + strand, within EX31_RS21445at 32.787 kb on + strand, within EX31_RS21445at 32.788 kb on - strandat 32.788 kb on - strandat 32.817 kb on - strandat 32.817 kb on - strandat 32.860 kb on + strandat 32.861 kb on - strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.921 kb on + strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 32.922 kb on - strandat 33.020 kb on + strand, within EX31_RS21450at 33.021 kb on - strand, within EX31_RS21450at 33.046 kb on + strand, within EX31_RS21450at 33.046 kb on + strand, within EX31_RS21450at 33.047 kb on - strand, within EX31_RS21450at 33.112 kb on - strand, within EX31_RS21450at 33.145 kb on + strand, within EX31_RS21450at 33.146 kb on - strand, within EX31_RS21450at 33.146 kb on - strand, within EX31_RS21450at 33.320 kb on + strand, within EX31_RS21450at 33.320 kb on + strand, within EX31_RS21450at 33.321 kb on - strand, within EX31_RS21450at 33.421 kb on - strand, within EX31_RS21450at 33.534 kb on + strand, within EX31_RS21450at 33.534 kb on + strand, within EX31_RS21450at 33.534 kb on + strand, within EX31_RS21450at 33.534 kb on + strand, within EX31_RS21450at 33.534 kb on + strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.535 kb on - strand, within EX31_RS21450at 33.547 kb on - strand, within EX31_RS21450at 33.547 kb on - strand, within EX31_RS21450at 33.609 kb on + strand, within EX31_RS21450at 33.609 kb on + strand, within EX31_RS21450at 33.609 kb on + strand, within EX31_RS21450at 33.610 kb on - strand, within EX31_RS21450at 33.610 kb on - strand, within EX31_RS21450at 33.610 kb on - strand, within EX31_RS21450at 33.610 kb on - strand, within EX31_RS21450at 33.610 kb on - strand, within EX31_RS21450at 33.626 kb on + strand, within EX31_RS21450at 33.626 kb on + strand, within EX31_RS21450at 33.626 kb on + strand, within EX31_RS21450at 33.627 kb on - strand, within EX31_RS21450at 33.627 kb on - strand, within EX31_RS21450at 33.638 kb on - strand, within EX31_RS21450at 33.638 kb on - strand, within EX31_RS21450at 33.665 kb on - strand, within EX31_RS21450at 33.665 kb on - strand, within EX31_RS21450at 33.665 kb on - strand, within EX31_RS21450at 33.697 kb on + strandat 33.697 kb on + strandat 33.698 kb on - strandat 33.698 kb on - strandat 33.698 kb on - strandat 33.745 kb on - strandat 33.745 kb on - strandat 33.805 kb on - strandat 33.813 kb on - strandat 33.816 kb on - strandat 33.816 kb on - strandat 33.816 kb on - strandat 33.816 kb on - strandat 33.816 kb on - strandat 33.829 kb on + strandat 33.858 kb on - strandat 33.882 kb on + strandat 33.920 kb on - strandat 33.967 kb on - strand, within EX31_RS21455at 33.967 kb on - strand, within EX31_RS21455at 33.994 kb on + strand, within EX31_RS21455at 33.994 kb on + strand, within EX31_RS21455at 33.994 kb on + strand, within EX31_RS21455at 33.995 kb on - strand, within EX31_RS21455at 33.995 kb on - strand, within EX31_RS21455at 33.997 kb on + strand, within EX31_RS21455at 33.997 kb on + strand, within EX31_RS21455at 33.998 kb on - strand, within EX31_RS21455at 33.998 kb on - strand, within EX31_RS21455at 33.998 kb on - strand, within EX31_RS21455at 34.096 kb on + strand, within EX31_RS21455at 34.096 kb on + strand, within EX31_RS21455at 34.137 kb on + strand, within EX31_RS21455at 34.137 kb on + strand, within EX31_RS21455at 34.137 kb on + strand, within EX31_RS21455at 34.137 kb on + strand, within EX31_RS21455at 34.137 kb on + strand, within EX31_RS21455at 34.138 kb on - strand, within EX31_RS21455at 34.138 kb on - strand, within EX31_RS21455at 34.170 kb on + strand, within EX31_RS21455at 34.170 kb on + strand, within EX31_RS21455at 34.170 kb on + strand, within EX31_RS21455at 34.170 kb on + strand, within EX31_RS21455at 34.171 kb on - strand, within EX31_RS21455at 34.174 kb on + strand, within EX31_RS21455at 34.174 kb on + strand, within EX31_RS21455at 34.175 kb on - strand, within EX31_RS21455at 34.175 kb on - strand, within EX31_RS21455at 34.175 kb on - strand, within EX31_RS21455at 34.216 kb on + strand, within EX31_RS21455at 34.217 kb on - strand, within EX31_RS21455at 34.404 kb on - strand, within EX31_RS21455at 34.404 kb on - strand, within EX31_RS21455at 34.558 kb on + strand, within EX31_RS21455at 34.558 kb on + strand, within EX31_RS21455at 34.562 kb on - strand, within EX31_RS21455at 34.562 kb on - strand, within EX31_RS21455at 34.562 kb on - strand, within EX31_RS21455at 34.607 kb on + strand, within EX31_RS21455at 34.607 kb on + strand, within EX31_RS21455at 34.607 kb on + strand, within EX31_RS21455at 34.608 kb on - strand, within EX31_RS21455at 34.608 kb on - strand, within EX31_RS21455at 34.608 kb on - strand, within EX31_RS21455at 34.622 kb on + strand, within EX31_RS21455at 34.623 kb on - strand, within EX31_RS21455at 34.623 kb on - strand, within EX31_RS21455

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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31,964 + -0.2
31,964 + -0.6
31,964 + +0.0
31,964 + +1.3
31,964 + -1.5
31,964 + -0.5
31,964 + +0.9
31,965 - +2.3
31,965 - +0.3
31,965 - +0.1
31,965 - -2.2
31,965 - -0.4
31,965 - +0.5
31,965 - -0.3
31,965 - +2.7
31,981 + -0.3
31,981 + -2.3
31,981 + -1.9
31,981 + -0.5
32,005 + +2.1
32,023 + +0.6
32,029 + -1.5
32,029 + +0.3
32,029 + -0.4
32,030 - +1.9
32,041 + +0.6
32,049 + +0.4
32,049 + -1.5
32,049 + +2.1
32,049 + -0.2
32,049 + -2.2
32,049 + +0.1
32,050 - +1.3
32,050 - -1.9
32,050 - +1.1
32,050 - +3.6
32,054 + +1.3
32,078 + -2.1
32,078 + -2.6
32,078 + -0.1
32,078 + +0.7
32,078 + -2.4
32,079 - +0.0
32,079 - -0.9
32,079 - +0.9
32,079 - +2.0
32,079 - +0.5
32,079 - +1.3
32,082 + +0.5
32,082 + +1.6
32,082 + +0.7
32,082 + +0.5
32,082 + -1.1
32,083 - -2.5
32,083 - -0.4
32,083 - -0.2
32,104 - +0.8
32,138 + -0.1
32,335 + EX31_RS21445 0.29 -0.1
32,335 + EX31_RS21445 0.29 +0.3
32,336 - EX31_RS21445 0.29 +2.3
32,336 - EX31_RS21445 0.29 -1.5
32,398 - EX31_RS21445 0.38 +1.1
32,410 + EX31_RS21445 0.39 +1.0
32,410 + EX31_RS21445 0.39 +1.7
32,410 + EX31_RS21445 0.39 +0.9
32,411 - EX31_RS21445 0.39 +2.5
32,412 + EX31_RS21445 0.40 -1.4
32,412 + EX31_RS21445 0.40 -1.5
32,412 + EX31_RS21445 0.40 -2.2
32,412 + EX31_RS21445 0.40 +0.3
32,412 + EX31_RS21445 0.40 -1.7
32,412 + EX31_RS21445 0.40 +0.3
32,412 + EX31_RS21445 0.40 +0.7
32,412 + EX31_RS21445 0.40 -1.7
32,412 + EX31_RS21445 0.40 -0.3
32,412 + EX31_RS21445 0.40 +1.0
32,412 + EX31_RS21445 0.40 +0.3
32,413 - EX31_RS21445 0.40 -0.7
32,413 - EX31_RS21445 0.40 -0.1
32,413 - EX31_RS21445 0.40 -1.1
32,413 - EX31_RS21445 0.40 -0.3
32,416 + EX31_RS21445 0.40 +0.5
32,416 + EX31_RS21445 0.40 -0.3
32,416 + EX31_RS21445 0.40 -0.7
32,416 + EX31_RS21445 0.40 +0.5
32,416 + EX31_RS21445 0.40 +0.9
32,417 - EX31_RS21445 0.40 +0.3
32,697 + EX31_RS21445 0.78 -0.3
32,697 + EX31_RS21445 0.78 +1.5
32,697 + EX31_RS21445 0.78 -0.3
32,697 + EX31_RS21445 0.78 -0.1
32,698 - EX31_RS21445 0.78 -0.3
32,698 - EX31_RS21445 0.78 +0.9
32,701 + EX31_RS21445 0.78 -1.1
32,724 + EX31_RS21445 0.81 +0.0
32,724 + EX31_RS21445 0.81 -0.1
32,724 + EX31_RS21445 0.81 -2.1
32,724 + EX31_RS21445 0.81 +0.1
32,724 + EX31_RS21445 0.81 -1.3
32,725 - EX31_RS21445 0.82 -0.3
32,725 - EX31_RS21445 0.82 +0.6
32,725 - EX31_RS21445 0.82 +1.5
32,725 - EX31_RS21445 0.82 +0.3
32,728 + EX31_RS21445 0.82 -0.4
32,728 + EX31_RS21445 0.82 -0.8
32,728 + EX31_RS21445 0.82 +0.0
32,728 + EX31_RS21445 0.82 +0.0
32,728 + EX31_RS21445 0.82 -0.2
32,728 + EX31_RS21445 0.82 +0.7
32,729 - EX31_RS21445 0.82 +1.5
32,729 - EX31_RS21445 0.82 +1.3
32,729 - EX31_RS21445 0.82 -3.3
32,729 - EX31_RS21445 0.82 -1.3
32,729 - EX31_RS21445 0.82 -2.4
32,729 - EX31_RS21445 0.82 -1.4
32,729 - EX31_RS21445 0.82 +1.1
32,729 - EX31_RS21445 0.82 +1.1
32,730 + EX31_RS21445 0.82 +0.7
32,730 + EX31_RS21445 0.82 -0.2
32,731 - EX31_RS21445 0.82 -0.5
32,731 - EX31_RS21445 0.82 +0.9
32,773 + EX31_RS21445 0.88 -1.7
32,774 - EX31_RS21445 0.88 -2.7
32,787 + EX31_RS21445 0.90 +1.0
32,787 + EX31_RS21445 0.90 +3.3
32,787 + EX31_RS21445 0.90 +0.0
32,788 - +0.3
32,788 - +1.3
32,817 - +1.7
32,817 - -0.3
32,860 + -1.1
32,861 - +0.0
32,921 + +0.5
32,921 + +0.5
32,921 + +0.4
32,921 + -0.1
32,921 + +1.5
32,921 + +0.9
32,921 + +1.0
32,921 + -1.5
32,921 + -0.1
32,921 + +0.4
32,922 - -0.3
32,922 - -1.7
32,922 - -1.1
32,922 - -0.7
32,922 - -0.4
32,922 - -1.7
32,922 - +0.7
32,922 - +0.8
32,922 - +1.5
32,922 - +0.1
32,922 - -0.6
32,922 - +1.0
32,922 - +0.3
33,020 + EX31_RS21450 0.12 +0.5
33,021 - EX31_RS21450 0.12 +1.3
33,046 + EX31_RS21450 0.15 +0.3
33,046 + EX31_RS21450 0.15 -1.5
33,047 - EX31_RS21450 0.15 +0.9
33,112 - EX31_RS21450 0.23 +0.6
33,145 + EX31_RS21450 0.27 +1.3
33,146 - EX31_RS21450 0.27 -2.2
33,146 - EX31_RS21450 0.27 -0.2
33,320 + EX31_RS21450 0.47 -1.9
33,320 + EX31_RS21450 0.47 -0.6
33,321 - EX31_RS21450 0.48 +0.8
33,421 - EX31_RS21450 0.59 +0.4
33,534 + EX31_RS21450 0.73 +0.3
33,534 + EX31_RS21450 0.73 +1.7
33,534 + EX31_RS21450 0.73 +1.0
33,534 + EX31_RS21450 0.73 +0.7
33,534 + EX31_RS21450 0.73 +0.3
33,535 - EX31_RS21450 0.73 +2.6
33,535 - EX31_RS21450 0.73 +0.1
33,535 - EX31_RS21450 0.73 -0.7
33,535 - EX31_RS21450 0.73 -0.5
33,535 - EX31_RS21450 0.73 -0.8
33,535 - EX31_RS21450 0.73 +1.3
33,547 - EX31_RS21450 0.74 +0.7
33,547 - EX31_RS21450 0.74 +0.4
33,609 + EX31_RS21450 0.82 +0.7
33,609 + EX31_RS21450 0.82 +0.1
33,609 + EX31_RS21450 0.82 +1.7
33,610 - EX31_RS21450 0.82 +0.6
33,610 - EX31_RS21450 0.82 -1.7
33,610 - EX31_RS21450 0.82 +2.7
33,610 - EX31_RS21450 0.82 +0.7
33,610 - EX31_RS21450 0.82 -0.7
33,626 + EX31_RS21450 0.84 -2.4
33,626 + EX31_RS21450 0.84 -1.4
33,626 + EX31_RS21450 0.84 -1.5
33,627 - EX31_RS21450 0.84 -0.3
33,627 - EX31_RS21450 0.84 +1.3
33,638 - EX31_RS21450 0.85 +1.1
33,638 - EX31_RS21450 0.85 +0.1
33,665 - EX31_RS21450 0.88 -0.1
33,665 - EX31_RS21450 0.88 -0.7
33,665 - EX31_RS21450 0.88 -0.3
33,697 + -1.3
33,697 + +0.0
33,698 - +0.8
33,698 - -0.5
33,698 - +0.3
33,745 - -0.9
33,745 - -0.1
33,805 - +2.1
33,813 - -0.1
33,816 - +0.6
33,816 - -0.6
33,816 - -1.3
33,816 - +0.4
33,816 - -0.3
33,829 + -0.5
33,858 - +1.3
33,882 + +0.0
33,920 - -0.2
33,967 - EX31_RS21455 0.11 +0.5
33,967 - EX31_RS21455 0.11 -0.7
33,994 + EX31_RS21455 0.14 -0.9
33,994 + EX31_RS21455 0.14 -1.8
33,994 + EX31_RS21455 0.14 -0.7
33,995 - EX31_RS21455 0.14 +0.0
33,995 - EX31_RS21455 0.14 -0.3
33,997 + EX31_RS21455 0.14 -0.7
33,997 + EX31_RS21455 0.14 +1.3
33,998 - EX31_RS21455 0.14 +0.8
33,998 - EX31_RS21455 0.14 +0.7
33,998 - EX31_RS21455 0.14 +0.7
34,096 + EX31_RS21455 0.25 +1.1
34,096 + EX31_RS21455 0.25 -0.7
34,137 + EX31_RS21455 0.29 +0.2
34,137 + EX31_RS21455 0.29 +0.6
34,137 + EX31_RS21455 0.29 +1.4
34,137 + EX31_RS21455 0.29 +0.0
34,137 + EX31_RS21455 0.29 -1.2
34,138 - EX31_RS21455 0.30 +1.4
34,138 - EX31_RS21455 0.30 +0.9
34,170 + EX31_RS21455 0.33 -0.7
34,170 + EX31_RS21455 0.33 -1.5
34,170 + EX31_RS21455 0.33 -1.7
34,170 + EX31_RS21455 0.33 -1.0
34,171 - EX31_RS21455 0.33 +0.5
34,174 + EX31_RS21455 0.34 +0.1
34,174 + EX31_RS21455 0.34 -1.4
34,175 - EX31_RS21455 0.34 +0.5
34,175 - EX31_RS21455 0.34 -0.9
34,175 - EX31_RS21455 0.34 +0.0
34,216 + EX31_RS21455 0.38 +1.3
34,217 - EX31_RS21455 0.38 -0.7
34,404 - EX31_RS21455 0.59 +1.0
34,404 - EX31_RS21455 0.59 -1.9
34,558 + EX31_RS21455 0.76 +0.1
34,558 + EX31_RS21455 0.76 +0.7
34,562 - EX31_RS21455 0.76 +1.3
34,562 - EX31_RS21455 0.76 -1.2
34,562 - EX31_RS21455 0.76 +0.6
34,607 + EX31_RS21455 0.81 +0.8
34,607 + EX31_RS21455 0.81 +0.3
34,607 + EX31_RS21455 0.81 -0.3
34,608 - EX31_RS21455 0.81 -0.4
34,608 - EX31_RS21455 0.81 +0.0
34,608 - EX31_RS21455 0.81 -0.3
34,622 + EX31_RS21455 0.83 +0.3
34,623 - EX31_RS21455 0.83 -1.1
34,623 - EX31_RS21455 0.83 -0.6

Or see this region's nucleotide sequence