Strain Fitness in Rahnella sp. WP5 around EX31_RS21145

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS21140 and EX31_RS21145 are separated by 54 nucleotidesEX31_RS21145 and EX31_RS21150 are separated by 650 nucleotides EX31_RS21140: EX31_RS21140 - AtzE family amidohydrolase, at 871,204 to 872,607 _RS21140 EX31_RS21145: EX31_RS21145 - oxalurate catabolism protein HpxZ, at 872,662 to 873,045 _RS21145 EX31_RS21150: EX31_RS21150 - allantoinase PuuE, at 873,696 to 874,634 _RS21150 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2 3at 871.732 kb on - strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.763 kb on + strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.764 kb on - strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.888 kb on + strand, within EX31_RS21140at 871.889 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.899 kb on - strand, within EX31_RS21140at 871.965 kb on + strand, within EX31_RS21140at 871.965 kb on + strand, within EX31_RS21140at 872.009 kb on - strand, within EX31_RS21140at 872.048 kb on + strand, within EX31_RS21140at 872.048 kb on + strand, within EX31_RS21140at 872.049 kb on - strand, within EX31_RS21140at 872.128 kb on - strand, within EX31_RS21140at 872.158 kb on + strand, within EX31_RS21140at 872.158 kb on + strand, within EX31_RS21140at 872.159 kb on - strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.248 kb on + strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.249 kb on - strand, within EX31_RS21140at 872.409 kb on + strand, within EX31_RS21140at 872.410 kb on - strand, within EX31_RS21140at 872.498 kb on + strandat 872.498 kb on + strandat 872.498 kb on + strandat 872.498 kb on + strandat 872.498 kb on + strandat 872.498 kb on + strandat 872.498 kb on + strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.499 kb on - strandat 872.662 kb on - strandat 872.662 kb on - strandat 872.676 kb on + strandat 872.677 kb on - strandat 872.719 kb on + strand, within EX31_RS21145at 872.719 kb on + strand, within EX31_RS21145at 872.720 kb on - strand, within EX31_RS21145at 872.822 kb on - strand, within EX31_RS21145at 872.873 kb on + strand, within EX31_RS21145at 872.874 kb on - strand, within EX31_RS21145at 872.898 kb on + strand, within EX31_RS21145at 873.168 kb on + strandat 873.182 kb on + strandat 873.182 kb on + strandat 873.249 kb on + strandat 873.249 kb on + strandat 873.250 kb on - strandat 873.288 kb on + strandat 873.289 kb on - strandat 873.289 kb on - strandat 873.436 kb on + strandat 873.489 kb on + strandat 873.489 kb on + strandat 873.489 kb on + strandat 873.489 kb on + strandat 873.551 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.562 kb on + strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.563 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.566 kb on - strandat 873.570 kb on - strandat 873.744 kb on - strandat 873.775 kb on + strandat 873.776 kb on - strandat 873.877 kb on + strand, within EX31_RS21150at 873.878 kb on - strand, within EX31_RS21150at 873.878 kb on - strand, within EX31_RS21150at 873.878 kb on - strand, within EX31_RS21150at 873.904 kb on + strand, within EX31_RS21150at 873.904 kb on + strand, within EX31_RS21150at 873.905 kb on - strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.908 kb on + strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.909 kb on - strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.910 kb on + strand, within EX31_RS21150at 873.911 kb on - strand, within EX31_RS21150at 873.911 kb on - strand, within EX31_RS21150at 873.911 kb on - strand, within EX31_RS21150at 873.911 kb on - strand, within EX31_RS21150at 873.977 kb on - strand, within EX31_RS21150at 874.020 kb on + strand, within EX31_RS21150at 874.020 kb on + strand, within EX31_RS21150at 874.020 kb on + strand, within EX31_RS21150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
871,732 - EX31_RS21140 0.38 +1.8
871,763 + EX31_RS21140 0.40 -0.7
871,763 + EX31_RS21140 0.40 -0.6
871,763 + EX31_RS21140 0.40 +0.8
871,763 + EX31_RS21140 0.40 +0.9
871,764 - EX31_RS21140 0.40 -0.0
871,764 - EX31_RS21140 0.40 +0.4
871,764 - EX31_RS21140 0.40 -0.5
871,764 - EX31_RS21140 0.40 -0.3
871,888 + EX31_RS21140 0.49 -1.9
871,888 + EX31_RS21140 0.49 +0.1
871,888 + EX31_RS21140 0.49 +0.7
871,889 - EX31_RS21140 0.49 +0.2
871,899 - EX31_RS21140 0.50 -2.7
871,899 - EX31_RS21140 0.50 +1.4
871,899 - EX31_RS21140 0.50 -0.5
871,965 + EX31_RS21140 0.54 -0.6
871,965 + EX31_RS21140 0.54 -0.4
872,009 - EX31_RS21140 0.57 -1.1
872,048 + EX31_RS21140 0.60 -1.9
872,048 + EX31_RS21140 0.60 +1.4
872,049 - EX31_RS21140 0.60 +0.4
872,128 - EX31_RS21140 0.66 +0.6
872,158 + EX31_RS21140 0.68 -0.7
872,158 + EX31_RS21140 0.68 -0.7
872,159 - EX31_RS21140 0.68 +0.6
872,248 + EX31_RS21140 0.74 +1.4
872,248 + EX31_RS21140 0.74 -0.9
872,248 + EX31_RS21140 0.74 -2.1
872,248 + EX31_RS21140 0.74 -0.8
872,248 + EX31_RS21140 0.74 -0.9
872,248 + EX31_RS21140 0.74 +0.3
872,248 + EX31_RS21140 0.74 +0.1
872,249 - EX31_RS21140 0.74 -0.6
872,249 - EX31_RS21140 0.74 -0.6
872,249 - EX31_RS21140 0.74 +0.4
872,249 - EX31_RS21140 0.74 +0.0
872,249 - EX31_RS21140 0.74 -0.3
872,249 - EX31_RS21140 0.74 +1.1
872,249 - EX31_RS21140 0.74 -0.1
872,409 + EX31_RS21140 0.86 +1.0
872,410 - EX31_RS21140 0.86 -0.4
872,498 + -0.3
872,498 + -1.4
872,498 + -1.4
872,498 + -1.0
872,498 + -1.8
872,498 + -0.1
872,498 + -0.0
872,499 - -1.1
872,499 - -0.8
872,499 - +0.8
872,499 - -0.1
872,499 - +0.8
872,499 - +0.1
872,499 - +1.1
872,662 - -0.2
872,662 - -0.1
872,676 + -1.8
872,677 - -0.4
872,719 + EX31_RS21145 0.15 +1.4
872,719 + EX31_RS21145 0.15 -0.4
872,720 - EX31_RS21145 0.15 -0.3
872,822 - EX31_RS21145 0.42 +0.4
872,873 + EX31_RS21145 0.55 +0.4
872,874 - EX31_RS21145 0.55 +0.4
872,898 + EX31_RS21145 0.61 -0.6
873,168 + -0.7
873,182 + +0.9
873,182 + -0.4
873,249 + +0.6
873,249 + +0.7
873,250 - +0.4
873,288 + -0.4
873,289 - +0.1
873,289 - -0.6
873,436 + -0.2
873,489 + -0.4
873,489 + +0.4
873,489 + -0.2
873,489 + +0.8
873,551 + -0.9
873,562 + -2.2
873,562 + +1.2
873,562 + +0.5
873,562 + +0.1
873,562 + -0.1
873,562 + +0.5
873,562 + -0.6
873,563 - -1.7
873,563 - +0.4
873,563 - -0.7
873,563 - -0.4
873,563 - +0.6
873,563 - +0.7
873,563 - +1.4
873,563 - -1.2
873,563 - -1.6
873,563 - -0.4
873,563 - +3.6
873,566 - -0.8
873,566 - +2.0
873,566 - +1.4
873,566 - +0.2
873,566 - -2.0
873,566 - -0.4
873,566 - -0.0
873,566 - +0.2
873,566 - +1.1
873,570 - -0.1
873,744 - -0.4
873,775 + -1.8
873,776 - +0.5
873,877 + EX31_RS21150 0.19 +0.3
873,878 - EX31_RS21150 0.19 -0.2
873,878 - EX31_RS21150 0.19 -0.3
873,878 - EX31_RS21150 0.19 -0.3
873,904 + EX31_RS21150 0.22 +0.6
873,904 + EX31_RS21150 0.22 +0.1
873,905 - EX31_RS21150 0.22 -0.2
873,908 + EX31_RS21150 0.23 +0.7
873,908 + EX31_RS21150 0.23 +0.4
873,908 + EX31_RS21150 0.23 +1.0
873,908 + EX31_RS21150 0.23 +0.5
873,908 + EX31_RS21150 0.23 +0.8
873,908 + EX31_RS21150 0.23 -0.3
873,908 + EX31_RS21150 0.23 -0.2
873,909 - EX31_RS21150 0.23 +1.5
873,909 - EX31_RS21150 0.23 -0.4
873,909 - EX31_RS21150 0.23 -0.6
873,909 - EX31_RS21150 0.23 -2.6
873,909 - EX31_RS21150 0.23 +0.0
873,909 - EX31_RS21150 0.23 -0.0
873,909 - EX31_RS21150 0.23 -0.2
873,909 - EX31_RS21150 0.23 -1.6
873,909 - EX31_RS21150 0.23 -1.5
873,910 + EX31_RS21150 0.23 +0.3
873,910 + EX31_RS21150 0.23 -0.1
873,910 + EX31_RS21150 0.23 -0.2
873,910 + EX31_RS21150 0.23 -0.0
873,910 + EX31_RS21150 0.23 +0.4
873,910 + EX31_RS21150 0.23 -0.9
873,910 + EX31_RS21150 0.23 +0.8
873,911 - EX31_RS21150 0.23 -0.5
873,911 - EX31_RS21150 0.23 +1.4
873,911 - EX31_RS21150 0.23 -0.9
873,911 - EX31_RS21150 0.23 -0.2
873,977 - EX31_RS21150 0.30 +0.4
874,020 + EX31_RS21150 0.35 +0.2
874,020 + EX31_RS21150 0.35 -0.2
874,020 + EX31_RS21150 0.35 +1.0

Or see this region's nucleotide sequence