Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19190 and EX31_RS19195 are separated by 27 nucleotides EX31_RS19195 and EX31_RS19200 are separated by 332 nucleotides
EX31_RS19190: EX31_RS19190 - Bcr/CflA family multidrug efflux MFS transporter, at 433,846 to 435,051
_RS19190
EX31_RS19195: EX31_RS19195 - 16S rRNA pseudouridine(516) synthase RsuA, at 435,079 to 435,786
_RS19195
EX31_RS19200: EX31_RS19200 - DEAD/DEAH box helicase, at 436,119 to 437,882
_RS19200
Position (kb) 435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 434.151 kb on + strand, within EX31_RS19190 at 434.238 kb on + strand, within EX31_RS19190 at 434.291 kb on + strand, within EX31_RS19190 at 434.292 kb on - strand, within EX31_RS19190 at 434.322 kb on + strand, within EX31_RS19190 at 434.322 kb on + strand, within EX31_RS19190 at 434.323 kb on - strand, within EX31_RS19190 at 434.323 kb on - strand, within EX31_RS19190 at 434.323 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.334 kb on - strand, within EX31_RS19190 at 434.397 kb on + strand, within EX31_RS19190 at 434.397 kb on + strand, within EX31_RS19190 at 434.398 kb on - strand, within EX31_RS19190 at 434.398 kb on - strand, within EX31_RS19190 at 434.398 kb on - strand, within EX31_RS19190 at 434.398 kb on - strand, within EX31_RS19190 at 434.398 kb on - strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.399 kb on + strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.400 kb on - strand, within EX31_RS19190 at 434.440 kb on - strand, within EX31_RS19190 at 434.499 kb on + strand, within EX31_RS19190 at 434.499 kb on + strand, within EX31_RS19190 at 434.499 kb on + strand, within EX31_RS19190 at 434.500 kb on - strand, within EX31_RS19190 at 434.500 kb on - strand, within EX31_RS19190 at 434.501 kb on + strand, within EX31_RS19190 at 434.501 kb on + strand, within EX31_RS19190 at 434.501 kb on + strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.502 kb on - strand, within EX31_RS19190 at 434.573 kb on - strand, within EX31_RS19190 at 434.677 kb on - strand, within EX31_RS19190 at 434.677 kb on - strand, within EX31_RS19190 at 434.891 kb on + strand, within EX31_RS19190 at 434.891 kb on + strand, within EX31_RS19190 at 434.892 kb on - strand, within EX31_RS19190 at 434.892 kb on - strand, within EX31_RS19190 at 434.892 kb on - strand, within EX31_RS19190 at 434.892 kb on - strand, within EX31_RS19190 at 434.933 kb on + strand at 434.955 kb on + strand at 434.955 kb on + strand at 434.955 kb on + strand at 434.955 kb on + strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.956 kb on - strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.966 kb on + strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.967 kb on - strand at 434.970 kb on + strand at 434.971 kb on - strand at 434.971 kb on - strand at 434.971 kb on - strand at 434.971 kb on - strand at 435.001 kb on - strand at 435.080 kb on + strand at 435.132 kb on - strand at 435.146 kb on - strand at 435.146 kb on - strand at 435.229 kb on + strand, within EX31_RS19195 at 435.230 kb on - strand, within EX31_RS19195 at 435.230 kb on - strand, within EX31_RS19195 at 435.322 kb on - strand, within EX31_RS19195 at 435.393 kb on - strand, within EX31_RS19195 at 435.509 kb on + strand, within EX31_RS19195 at 435.533 kb on + strand, within EX31_RS19195 at 435.534 kb on - strand, within EX31_RS19195 at 435.534 kb on - strand, within EX31_RS19195 at 435.564 kb on + strand, within EX31_RS19195 at 435.565 kb on - strand, within EX31_RS19195 at 435.565 kb on - strand, within EX31_RS19195 at 435.575 kb on + strand, within EX31_RS19195 at 435.575 kb on + strand, within EX31_RS19195 at 435.576 kb on - strand, within EX31_RS19195 at 435.755 kb on - strand at 435.755 kb on - strand at 435.755 kb on - strand at 435.832 kb on + strand at 435.833 kb on - strand at 435.858 kb on + strand at 435.911 kb on + strand at 435.912 kb on - strand at 435.915 kb on - strand at 435.937 kb on - strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 435.959 kb on + strand at 435.959 kb on + strand at 435.959 kb on + strand at 435.959 kb on + strand at 435.959 kb on + strand at 435.960 kb on - strand at 435.960 kb on - strand at 435.960 kb on - strand at 435.993 kb on - strand at 436.002 kb on - strand at 436.002 kb on - strand at 436.058 kb on + strand at 436.059 kb on - strand at 436.085 kb on + strand at 436.086 kb on - strand at 436.091 kb on - strand at 436.326 kb on + strand, within EX31_RS19200 at 436.327 kb on - strand, within EX31_RS19200 at 436.327 kb on - strand, within EX31_RS19200 at 436.327 kb on - strand, within EX31_RS19200 at 436.399 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.484 kb on + strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.485 kb on - strand, within EX31_RS19200 at 436.605 kb on + strand, within EX31_RS19200 at 436.605 kb on + strand, within EX31_RS19200 at 436.605 kb on + strand, within EX31_RS19200 at 436.605 kb on + strand, within EX31_RS19200 at 436.606 kb on - strand, within EX31_RS19200 at 436.611 kb on + strand, within EX31_RS19200 at 436.612 kb on - strand, within EX31_RS19200 at 436.612 kb on - strand, within EX31_RS19200 at 436.612 kb on - strand, within EX31_RS19200 at 436.630 kb on + strand, within EX31_RS19200 at 436.631 kb on - strand, within EX31_RS19200 at 436.631 kb on - strand, within EX31_RS19200 at 436.631 kb on - strand, within EX31_RS19200 at 436.668 kb on + strand, within EX31_RS19200 at 436.668 kb on + strand, within EX31_RS19200 at 436.668 kb on + strand, within EX31_RS19200 at 436.669 kb on - strand, within EX31_RS19200 at 436.669 kb on - strand, within EX31_RS19200 at 436.669 kb on - strand, within EX31_RS19200 at 436.669 kb on - strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.686 kb on + strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.687 kb on - strand, within EX31_RS19200 at 436.746 kb on + strand, within EX31_RS19200 at 436.746 kb on + strand, within EX31_RS19200 at 436.747 kb on - strand, within EX31_RS19200 at 436.775 kb on + strand, within EX31_RS19200 at 436.775 kb on + strand, within EX31_RS19200 at 436.776 kb on - strand, within EX31_RS19200
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 434,151 + EX31_RS19190 0.25 -2.5 434,238 + EX31_RS19190 0.33 +0.3 434,291 + EX31_RS19190 0.37 +0.7 434,292 - EX31_RS19190 0.37 +0.1 434,322 + EX31_RS19190 0.39 +0.8 434,322 + EX31_RS19190 0.39 -0.6 434,323 - EX31_RS19190 0.40 +0.1 434,323 - EX31_RS19190 0.40 -1.1 434,323 - EX31_RS19190 0.40 -0.1 434,334 - EX31_RS19190 0.40 -0.6 434,334 - EX31_RS19190 0.40 +0.6 434,334 - EX31_RS19190 0.40 +0.5 434,334 - EX31_RS19190 0.40 -0.1 434,334 - EX31_RS19190 0.40 -0.2 434,334 - EX31_RS19190 0.40 -0.3 434,397 + EX31_RS19190 0.46 +0.3 434,397 + EX31_RS19190 0.46 -1.1 434,398 - EX31_RS19190 0.46 -0.1 434,398 - EX31_RS19190 0.46 +0.5 434,398 - EX31_RS19190 0.46 +0.8 434,398 - EX31_RS19190 0.46 +2.3 434,398 - EX31_RS19190 0.46 -0.7 434,399 + EX31_RS19190 0.46 +0.8 434,399 + EX31_RS19190 0.46 +1.3 434,399 + EX31_RS19190 0.46 +0.3 434,399 + EX31_RS19190 0.46 +1.5 434,399 + EX31_RS19190 0.46 -1.5 434,399 + EX31_RS19190 0.46 -2.2 434,399 + EX31_RS19190 0.46 +0.9 434,399 + EX31_RS19190 0.46 +0.3 434,399 + EX31_RS19190 0.46 -0.1 434,399 + EX31_RS19190 0.46 +2.3 434,400 - EX31_RS19190 0.46 +0.1 434,400 - EX31_RS19190 0.46 +0.3 434,400 - EX31_RS19190 0.46 +0.1 434,400 - EX31_RS19190 0.46 -0.5 434,400 - EX31_RS19190 0.46 +0.9 434,400 - EX31_RS19190 0.46 -0.8 434,400 - EX31_RS19190 0.46 -0.7 434,400 - EX31_RS19190 0.46 +0.0 434,400 - EX31_RS19190 0.46 -2.2 434,400 - EX31_RS19190 0.46 -0.2 434,400 - EX31_RS19190 0.46 +1.3 434,440 - EX31_RS19190 0.49 +0.7 434,499 + EX31_RS19190 0.54 -0.1 434,499 + EX31_RS19190 0.54 -0.5 434,499 + EX31_RS19190 0.54 -1.7 434,500 - EX31_RS19190 0.54 -0.5 434,500 - EX31_RS19190 0.54 -2.3 434,501 + EX31_RS19190 0.54 +0.9 434,501 + EX31_RS19190 0.54 +0.4 434,501 + EX31_RS19190 0.54 -0.7 434,502 - EX31_RS19190 0.54 +0.3 434,502 - EX31_RS19190 0.54 +0.5 434,502 - EX31_RS19190 0.54 +1.3 434,502 - EX31_RS19190 0.54 +1.6 434,502 - EX31_RS19190 0.54 -0.8 434,502 - EX31_RS19190 0.54 -0.3 434,502 - EX31_RS19190 0.54 +1.5 434,573 - EX31_RS19190 0.60 -1.3 434,677 - EX31_RS19190 0.69 -0.5 434,677 - EX31_RS19190 0.69 -0.3 434,891 + EX31_RS19190 0.87 +1.3 434,891 + EX31_RS19190 0.87 +2.6 434,892 - EX31_RS19190 0.87 +0.1 434,892 - EX31_RS19190 0.87 +0.6 434,892 - EX31_RS19190 0.87 +0.5 434,892 - EX31_RS19190 0.87 -0.3 434,933 + +2.4 434,955 + +1.3 434,955 + +0.6 434,955 + +2.0 434,955 + -0.1 434,956 - -0.6 434,956 - -1.9 434,956 - +1.1 434,956 - +0.7 434,956 - -0.7 434,956 - -0.3 434,956 - -1.8 434,956 - -0.5 434,966 + -0.3 434,966 + +2.0 434,966 + +0.6 434,966 + -0.7 434,966 + +1.0 434,966 + +0.8 434,966 + -0.3 434,966 + +0.9 434,966 + -0.2 434,966 + -0.9 434,966 + +0.2 434,966 + +0.6 434,967 - -1.3 434,967 - -0.6 434,967 - +0.6 434,967 - -1.5 434,967 - +1.5 434,967 - +0.8 434,967 - +0.2 434,967 - +0.3 434,967 - +0.9 434,967 - -0.7 434,967 - +0.1 434,967 - +0.9 434,967 - -0.3 434,967 - +0.3 434,967 - -0.1 434,967 - +0.8 434,967 - -1.1 434,970 + +1.0 434,971 - -1.7 434,971 - +0.9 434,971 - -2.2 434,971 - -0.5 435,001 - +0.8 435,080 + +0.3 435,132 - +0.6 435,146 - +0.5 435,146 - +1.1 435,229 + EX31_RS19195 0.21 -0.1 435,230 - EX31_RS19195 0.21 +0.8 435,230 - EX31_RS19195 0.21 -0.1 435,322 - EX31_RS19195 0.34 +0.0 435,393 - EX31_RS19195 0.44 -1.9 435,509 + EX31_RS19195 0.61 -2.2 435,533 + EX31_RS19195 0.64 +1.1 435,534 - EX31_RS19195 0.64 -1.4 435,534 - EX31_RS19195 0.64 +0.0 435,564 + EX31_RS19195 0.69 -0.3 435,565 - EX31_RS19195 0.69 -0.1 435,565 - EX31_RS19195 0.69 -0.3 435,575 + EX31_RS19195 0.70 -0.3 435,575 + EX31_RS19195 0.70 -0.7 435,576 - EX31_RS19195 0.70 +1.3 435,755 - +0.0 435,755 - +1.5 435,755 - -0.2 435,832 + +2.0 435,833 - -0.7 435,858 + -0.2 435,911 + -2.1 435,912 - -0.1 435,915 - +0.1 435,937 - +1.0 435,956 + +1.6 435,956 + +1.7 435,956 + -1.9 435,956 + -2.2 435,956 + +0.3 435,956 + +0.3 435,956 + +0.9 435,956 + +0.5 435,957 - -1.6 435,957 - -0.3 435,957 - +0.3 435,957 - -0.3 435,957 - -1.1 435,957 - -1.1 435,957 - +2.3 435,959 + +0.5 435,959 + -0.7 435,959 + +0.7 435,959 + +3.3 435,959 + +0.5 435,960 - +0.9 435,960 - +2.0 435,960 - -0.3 435,993 - -0.1 436,002 - +0.6 436,002 - -1.4 436,058 + +0.1 436,059 - +0.6 436,085 + +1.0 436,086 - -0.5 436,091 - -1.3 436,326 + EX31_RS19200 0.12 -0.2 436,327 - EX31_RS19200 0.12 -0.8 436,327 - EX31_RS19200 0.12 +0.3 436,327 - EX31_RS19200 0.12 +1.7 436,399 + EX31_RS19200 0.16 +0.7 436,484 + EX31_RS19200 0.21 +0.4 436,484 + EX31_RS19200 0.21 -2.2 436,484 + EX31_RS19200 0.21 -0.9 436,484 + EX31_RS19200 0.21 +0.3 436,484 + EX31_RS19200 0.21 +1.3 436,484 + EX31_RS19200 0.21 +0.8 436,484 + EX31_RS19200 0.21 +0.5 436,484 + EX31_RS19200 0.21 -1.3 436,484 + EX31_RS19200 0.21 +0.3 436,484 + EX31_RS19200 0.21 +0.5 436,485 - EX31_RS19200 0.21 -0.7 436,485 - EX31_RS19200 0.21 -2.8 436,485 - EX31_RS19200 0.21 -0.7 436,485 - EX31_RS19200 0.21 -0.1 436,485 - EX31_RS19200 0.21 -0.2 436,485 - EX31_RS19200 0.21 -0.1 436,485 - EX31_RS19200 0.21 +0.7 436,485 - EX31_RS19200 0.21 -0.7 436,485 - EX31_RS19200 0.21 +2.0 436,485 - EX31_RS19200 0.21 -0.5 436,485 - EX31_RS19200 0.21 +0.6 436,485 - EX31_RS19200 0.21 +0.9 436,485 - EX31_RS19200 0.21 +0.5 436,605 + EX31_RS19200 0.28 -1.7 436,605 + EX31_RS19200 0.28 -0.1 436,605 + EX31_RS19200 0.28 -2.2 436,605 + EX31_RS19200 0.28 +0.7 436,606 - EX31_RS19200 0.28 +0.7 436,611 + EX31_RS19200 0.28 +0.6 436,612 - EX31_RS19200 0.28 +0.4 436,612 - EX31_RS19200 0.28 +0.9 436,612 - EX31_RS19200 0.28 +0.0 436,630 + EX31_RS19200 0.29 +0.9 436,631 - EX31_RS19200 0.29 -0.3 436,631 - EX31_RS19200 0.29 -0.4 436,631 - EX31_RS19200 0.29 +1.3 436,668 + EX31_RS19200 0.31 -1.0 436,668 + EX31_RS19200 0.31 -1.1 436,668 + EX31_RS19200 0.31 +0.0 436,669 - EX31_RS19200 0.31 -1.3 436,669 - EX31_RS19200 0.31 -0.3 436,669 - EX31_RS19200 0.31 +0.5 436,669 - EX31_RS19200 0.31 -0.2 436,686 + EX31_RS19200 0.32 -1.0 436,686 + EX31_RS19200 0.32 +1.3 436,686 + EX31_RS19200 0.32 +2.3 436,686 + EX31_RS19200 0.32 -1.1 436,686 + EX31_RS19200 0.32 +0.9 436,686 + EX31_RS19200 0.32 +0.9 436,686 + EX31_RS19200 0.32 +0.8 436,687 - EX31_RS19200 0.32 -1.9 436,687 - EX31_RS19200 0.32 +1.0 436,687 - EX31_RS19200 0.32 +0.5 436,687 - EX31_RS19200 0.32 +0.1 436,687 - EX31_RS19200 0.32 -0.1 436,687 - EX31_RS19200 0.32 -0.3 436,746 + EX31_RS19200 0.36 +0.9 436,746 + EX31_RS19200 0.36 -1.5 436,747 - EX31_RS19200 0.36 +0.3 436,775 + EX31_RS19200 0.37 -3.1 436,775 + EX31_RS19200 0.37 +1.3 436,776 - EX31_RS19200 0.37 -0.1
Or see this region's nucleotide sequence