Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19100 and EX31_RS19105 are separated by 249 nucleotides EX31_RS19105 and EX31_RS19110 are separated by 214 nucleotides
EX31_RS19100: EX31_RS19100 - FCD domain-containing protein, at 412,990 to 413,721
_RS19100
EX31_RS19105: EX31_RS19105 - hypothetical protein, at 413,971 to 414,282
_RS19105
EX31_RS19110: EX31_RS19110 - GTP-binding protein, at 414,497 to 415,471
_RS19110
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 412.974 kb on + strand at 412.974 kb on + strand at 412.974 kb on + strand at 412.975 kb on - strand at 412.975 kb on - strand at 413.066 kb on - strand, within EX31_RS19100 at 413.073 kb on + strand, within EX31_RS19100 at 413.074 kb on - strand, within EX31_RS19100 at 413.074 kb on - strand, within EX31_RS19100 at 413.074 kb on - strand, within EX31_RS19100 at 413.074 kb on - strand, within EX31_RS19100 at 413.137 kb on + strand, within EX31_RS19100 at 413.138 kb on - strand, within EX31_RS19100 at 413.392 kb on - strand, within EX31_RS19100 at 413.392 kb on - strand, within EX31_RS19100 at 413.392 kb on - strand, within EX31_RS19100 at 413.458 kb on + strand, within EX31_RS19100 at 413.458 kb on + strand, within EX31_RS19100 at 413.462 kb on - strand, within EX31_RS19100 at 413.505 kb on + strand, within EX31_RS19100 at 413.524 kb on + strand, within EX31_RS19100 at 413.524 kb on + strand, within EX31_RS19100 at 413.524 kb on + strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.525 kb on - strand, within EX31_RS19100 at 413.528 kb on + strand, within EX31_RS19100 at 413.529 kb on - strand, within EX31_RS19100 at 413.529 kb on - strand, within EX31_RS19100 at 413.529 kb on - strand, within EX31_RS19100 at 413.545 kb on - strand, within EX31_RS19100 at 413.597 kb on - strand, within EX31_RS19100 at 413.663 kb on + strand at 413.663 kb on + strand at 413.664 kb on - strand at 413.689 kb on + strand at 413.689 kb on + strand at 413.690 kb on - strand at 413.702 kb on - strand at 413.711 kb on + strand at 413.712 kb on - strand at 413.791 kb on + strand at 413.804 kb on + strand at 413.838 kb on + strand at 413.839 kb on - strand at 413.904 kb on + strand at 413.905 kb on - strand at 413.905 kb on - strand at 413.905 kb on - strand at 413.905 kb on - strand at 413.951 kb on + strand at 413.952 kb on - strand at 413.952 kb on - strand at 413.952 kb on - strand at 413.958 kb on + strand at 413.959 kb on - strand at 413.959 kb on - strand at 413.973 kb on - strand at 413.973 kb on - strand at 413.973 kb on - strand at 413.973 kb on - strand at 413.977 kb on - strand at 413.977 kb on - strand at 413.978 kb on + strand at 413.979 kb on - strand at 414.012 kb on + strand, within EX31_RS19105 at 414.013 kb on - strand, within EX31_RS19105 at 414.013 kb on - strand, within EX31_RS19105 at 414.015 kb on + strand, within EX31_RS19105 at 414.016 kb on - strand, within EX31_RS19105 at 414.016 kb on - strand, within EX31_RS19105 at 414.018 kb on + strand, within EX31_RS19105 at 414.018 kb on + strand, within EX31_RS19105 at 414.019 kb on - strand, within EX31_RS19105 at 414.087 kb on + strand, within EX31_RS19105 at 414.141 kb on + strand, within EX31_RS19105 at 414.141 kb on + strand, within EX31_RS19105 at 414.142 kb on - strand, within EX31_RS19105 at 414.142 kb on - strand, within EX31_RS19105 at 414.142 kb on - strand, within EX31_RS19105 at 414.142 kb on - strand, within EX31_RS19105 at 414.142 kb on - strand, within EX31_RS19105 at 414.190 kb on - strand, within EX31_RS19105 at 414.190 kb on - strand, within EX31_RS19105 at 414.195 kb on + strand, within EX31_RS19105 at 414.196 kb on - strand, within EX31_RS19105 at 414.262 kb on + strand at 414.262 kb on + strand at 414.262 kb on + strand at 414.262 kb on + strand at 414.271 kb on - strand at 414.271 kb on - strand at 414.271 kb on - strand at 414.298 kb on + strand at 414.298 kb on + strand at 414.298 kb on + strand at 414.305 kb on + strand at 414.339 kb on + strand at 414.343 kb on - strand at 414.343 kb on - strand at 414.343 kb on - strand at 414.348 kb on + strand at 414.348 kb on + strand at 414.348 kb on + strand at 414.359 kb on - strand at 414.420 kb on + strand at 414.420 kb on + strand at 414.420 kb on + strand at 414.420 kb on + strand at 414.421 kb on - strand at 414.421 kb on - strand at 414.421 kb on - strand at 414.421 kb on - strand at 414.421 kb on - strand at 414.639 kb on + strand, within EX31_RS19110 at 414.640 kb on - strand, within EX31_RS19110 at 414.640 kb on - strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.727 kb on + strand, within EX31_RS19110 at 414.728 kb on - strand, within EX31_RS19110 at 414.728 kb on - strand, within EX31_RS19110 at 414.728 kb on - strand, within EX31_RS19110 at 414.728 kb on - strand, within EX31_RS19110 at 414.732 kb on + strand, within EX31_RS19110 at 414.733 kb on - strand, within EX31_RS19110 at 414.746 kb on - strand, within EX31_RS19110 at 414.765 kb on + strand, within EX31_RS19110 at 414.825 kb on - strand, within EX31_RS19110 at 414.880 kb on - strand, within EX31_RS19110 at 414.880 kb on - strand, within EX31_RS19110 at 414.940 kb on + strand, within EX31_RS19110 at 414.952 kb on + strand, within EX31_RS19110 at 414.952 kb on + strand, within EX31_RS19110 at 414.952 kb on + strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 414.953 kb on - strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.065 kb on + strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.066 kb on - strand, within EX31_RS19110 at 415.108 kb on + strand, within EX31_RS19110 at 415.109 kb on - strand, within EX31_RS19110 at 415.109 kb on - strand, within EX31_RS19110 at 415.205 kb on + strand, within EX31_RS19110 at 415.205 kb on + strand, within EX31_RS19110 at 415.206 kb on - strand, within EX31_RS19110 at 415.207 kb on + strand, within EX31_RS19110 at 415.224 kb on + strand, within EX31_RS19110 at 415.224 kb on + strand, within EX31_RS19110 at 415.224 kb on + strand, within EX31_RS19110 at 415.224 kb on + strand, within EX31_RS19110 at 415.224 kb on + strand, within EX31_RS19110 at 415.225 kb on - strand, within EX31_RS19110 at 415.225 kb on - strand, within EX31_RS19110
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 412,974 + -0.3 412,974 + +1.3 412,974 + -2.3 412,975 - +0.8 412,975 - +0.1 413,066 - EX31_RS19100 0.10 +1.3 413,073 + EX31_RS19100 0.11 +2.4 413,074 - EX31_RS19100 0.11 -0.2 413,074 - EX31_RS19100 0.11 +0.6 413,074 - EX31_RS19100 0.11 -1.5 413,074 - EX31_RS19100 0.11 -0.1 413,137 + EX31_RS19100 0.20 +2.4 413,138 - EX31_RS19100 0.20 -1.7 413,392 - EX31_RS19100 0.55 +1.3 413,392 - EX31_RS19100 0.55 +0.0 413,392 - EX31_RS19100 0.55 -0.9 413,458 + EX31_RS19100 0.64 +0.9 413,458 + EX31_RS19100 0.64 +0.3 413,462 - EX31_RS19100 0.64 +1.1 413,505 + EX31_RS19100 0.70 -0.9 413,524 + EX31_RS19100 0.73 +0.9 413,524 + EX31_RS19100 0.73 -1.3 413,524 + EX31_RS19100 0.73 -0.3 413,525 - EX31_RS19100 0.73 -0.9 413,525 - EX31_RS19100 0.73 -0.3 413,525 - EX31_RS19100 0.73 -0.1 413,525 - EX31_RS19100 0.73 +0.3 413,525 - EX31_RS19100 0.73 -1.2 413,525 - EX31_RS19100 0.73 +0.7 413,525 - EX31_RS19100 0.73 +0.8 413,525 - EX31_RS19100 0.73 +0.1 413,525 - EX31_RS19100 0.73 -1.5 413,525 - EX31_RS19100 0.73 -0.0 413,525 - EX31_RS19100 0.73 +0.3 413,525 - EX31_RS19100 0.73 +1.4 413,525 - EX31_RS19100 0.73 +0.1 413,528 + EX31_RS19100 0.73 +1.3 413,529 - EX31_RS19100 0.74 +1.0 413,529 - EX31_RS19100 0.74 -1.9 413,529 - EX31_RS19100 0.74 -0.2 413,545 - EX31_RS19100 0.76 +1.5 413,597 - EX31_RS19100 0.83 -0.7 413,663 + +0.7 413,663 + +0.8 413,664 - -1.2 413,689 + +1.3 413,689 + +1.3 413,690 - +0.5 413,702 - +1.5 413,711 + +0.3 413,712 - -2.1 413,791 + +0.7 413,804 + -1.3 413,838 + +1.1 413,839 - +0.7 413,904 + +1.3 413,905 - +0.1 413,905 - +1.1 413,905 - +0.1 413,905 - +0.7 413,951 + -0.1 413,952 - -0.5 413,952 - +1.3 413,952 - +0.3 413,958 + +1.3 413,959 - +1.1 413,959 - -1.9 413,973 - +0.8 413,973 - +0.8 413,973 - -0.8 413,973 - -0.9 413,977 - -0.2 413,977 - -0.3 413,978 + -1.1 413,979 - +0.3 414,012 + EX31_RS19105 0.13 +1.7 414,013 - EX31_RS19105 0.13 -1.1 414,013 - EX31_RS19105 0.13 +1.0 414,015 + EX31_RS19105 0.14 +0.8 414,016 - EX31_RS19105 0.14 -0.2 414,016 - EX31_RS19105 0.14 +1.0 414,018 + EX31_RS19105 0.15 +1.0 414,018 + EX31_RS19105 0.15 -0.5 414,019 - EX31_RS19105 0.15 +0.3 414,087 + EX31_RS19105 0.37 +0.5 414,141 + EX31_RS19105 0.54 +0.3 414,141 + EX31_RS19105 0.54 +1.3 414,142 - EX31_RS19105 0.55 +0.3 414,142 - EX31_RS19105 0.55 +1.7 414,142 - EX31_RS19105 0.55 +0.0 414,142 - EX31_RS19105 0.55 +0.8 414,142 - EX31_RS19105 0.55 +0.3 414,190 - EX31_RS19105 0.70 +1.8 414,190 - EX31_RS19105 0.70 +1.6 414,195 + EX31_RS19105 0.72 +0.3 414,196 - EX31_RS19105 0.72 +1.8 414,262 + +0.5 414,262 + +0.7 414,262 + -0.9 414,262 + +0.8 414,271 - -1.9 414,271 - +1.0 414,271 - -0.9 414,298 + -0.3 414,298 + -0.3 414,298 + -2.3 414,305 + -0.7 414,339 + +0.9 414,343 - -1.7 414,343 - -0.6 414,343 - -0.6 414,348 + +0.0 414,348 + -0.8 414,348 + -1.2 414,359 - +0.8 414,420 + -0.5 414,420 + -0.0 414,420 + -0.8 414,420 + +1.3 414,421 - +0.3 414,421 - -0.1 414,421 - +0.8 414,421 - -0.9 414,421 - +0.6 414,639 + EX31_RS19110 0.15 +0.5 414,640 - EX31_RS19110 0.15 +0.9 414,640 - EX31_RS19110 0.15 -0.3 414,727 + EX31_RS19110 0.24 +0.5 414,727 + EX31_RS19110 0.24 -0.2 414,727 + EX31_RS19110 0.24 +1.0 414,727 + EX31_RS19110 0.24 +0.3 414,727 + EX31_RS19110 0.24 +1.8 414,727 + EX31_RS19110 0.24 -0.4 414,727 + EX31_RS19110 0.24 +0.2 414,727 + EX31_RS19110 0.24 -0.2 414,727 + EX31_RS19110 0.24 +2.4 414,727 + EX31_RS19110 0.24 -0.2 414,728 - EX31_RS19110 0.24 +0.7 414,728 - EX31_RS19110 0.24 -0.4 414,728 - EX31_RS19110 0.24 +1.7 414,728 - EX31_RS19110 0.24 +1.0 414,732 + EX31_RS19110 0.24 -0.0 414,733 - EX31_RS19110 0.24 +0.6 414,746 - EX31_RS19110 0.26 -1.4 414,765 + EX31_RS19110 0.27 +0.6 414,825 - EX31_RS19110 0.34 -0.5 414,880 - EX31_RS19110 0.39 -0.3 414,880 - EX31_RS19110 0.39 +3.3 414,940 + EX31_RS19110 0.45 +1.8 414,952 + EX31_RS19110 0.47 -0.7 414,952 + EX31_RS19110 0.47 -0.3 414,952 + EX31_RS19110 0.47 +1.4 414,953 - EX31_RS19110 0.47 -0.1 414,953 - EX31_RS19110 0.47 -0.1 414,953 - EX31_RS19110 0.47 +0.0 414,953 - EX31_RS19110 0.47 +0.0 414,953 - EX31_RS19110 0.47 +0.5 414,953 - EX31_RS19110 0.47 -0.3 415,065 + EX31_RS19110 0.58 -0.7 415,065 + EX31_RS19110 0.58 +0.8 415,065 + EX31_RS19110 0.58 -1.1 415,065 + EX31_RS19110 0.58 +0.3 415,065 + EX31_RS19110 0.58 -0.7 415,065 + EX31_RS19110 0.58 -2.1 415,065 + EX31_RS19110 0.58 -1.5 415,066 - EX31_RS19110 0.58 -1.9 415,066 - EX31_RS19110 0.58 +1.9 415,066 - EX31_RS19110 0.58 +0.3 415,066 - EX31_RS19110 0.58 -0.2 415,066 - EX31_RS19110 0.58 +0.3 415,066 - EX31_RS19110 0.58 -0.3 415,108 + EX31_RS19110 0.63 +0.5 415,109 - EX31_RS19110 0.63 +1.1 415,109 - EX31_RS19110 0.63 +1.3 415,205 + EX31_RS19110 0.73 +1.0 415,205 + EX31_RS19110 0.73 -0.9 415,206 - EX31_RS19110 0.73 -0.2 415,207 + EX31_RS19110 0.73 +0.7 415,224 + EX31_RS19110 0.75 +1.3 415,224 + EX31_RS19110 0.75 -0.7 415,224 + EX31_RS19110 0.75 -0.5 415,224 + EX31_RS19110 0.75 +1.3 415,224 + EX31_RS19110 0.75 +1.8 415,225 - EX31_RS19110 0.75 +0.4 415,225 - EX31_RS19110 0.75 -0.3
Or see this region's nucleotide sequence