Strain Fitness in Rahnella sp. WP5 around EX31_RS15750

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,253	+				+0.8
1,253	+				-0.3
1,258	+				-0.0
1,258	+				+1.7
1,258	+				-0.8
1,258	+				+0.0
1,258	+				+3.0
1,258	+				+0.3
1,258	+				-0.1
1,258	+				+0.3
1,258	+				+0.8
1,258	+				+0.9
1,258	+				+0.2
1,258	+				-0.2
1,258	+				+1.6
1,258	+				-0.1
1,258	+				+1.0
1,258	+				-1.0
1,258	+				+0.9
1,258	+				+0.1
1,259	-				+0.0
1,259	-				+0.4
1,259	-				+0.5
1,259	-				-0.2
1,259	-				-1.1
1,259	-				+2.3
1,259	-				+0.1
1,259	-				+0.3
1,262	+				+0.7
1,262	+				-0.1
1,262	+				+1.8
1,262	+				+0.7
1,262	+				+0.0
1,262	+				-0.2
1,263	-				-0.3
1,263	-				+0.2
1,263	-				+0.6
1,263	-				-0.1
1,263	-				+0.6
1,263	-				-0.1
1,263	-				+0.5
1,270	+				+1.8
1,270	+				-0.2
1,270	+				+0.7
1,271	-				-1.5
1,271	-				-0.7
1,271	-				-1.2
1,272	+				-0.0
1,272	+				-0.9
1,272	+				+0.7
1,272	+				+2.4
1,273	-				+1.0
1,273	-				+0.4
1,273	-				-0.5
1,273	-				+1.0
1,273	-				+0.3
1,273	-				+0.9
1,290	+				+2.3
1,319	-				+0.7
1,319	-				+0.8
1,319	-				+1.2
1,319	-				+1.2
1,336	-				-2.0
1,344	+		EX31_RS15745	0.10	+1.6
1,345	-		EX31_RS15745	0.10	-0.1
1,355	+		EX31_RS15745	0.12	-2.0
1,355	+		EX31_RS15745	0.12	+0.3
1,355	+		EX31_RS15745	0.12	+1.0
1,363	-		EX31_RS15745	0.13	-2.5
1,423	-		EX31_RS15745	0.22	+1.8
1,484	-		EX31_RS15745	0.32	-1.2
1,509	+		EX31_RS15745	0.35	-1.0
1,531	+		EX31_RS15745	0.39	+0.8
1,532	-		EX31_RS15745	0.39	-0.2
1,560	-		EX31_RS15745	0.43	+1.1
1,560	-		EX31_RS15745	0.43	+1.0
1,560	-		EX31_RS15745	0.43	+0.9
1,560	-		EX31_RS15745	0.43	+0.4
1,605	-		EX31_RS15745	0.50	+1.0
1,605	-		EX31_RS15745	0.50	+0.8
1,605	-		EX31_RS15745	0.50	-0.5
1,605	-		EX31_RS15745	0.50	+0.7
1,611	-		EX31_RS15745	0.51	+0.6
1,624	+		EX31_RS15745	0.53	-0.7
1,624	+		EX31_RS15745	0.53	-1.5
1,625	-		EX31_RS15745	0.53	+0.1
1,625	-		EX31_RS15745	0.53	-0.5
1,625	-		EX31_RS15745	0.53	+0.1
1,626	+		EX31_RS15745	0.53	+0.3
1,626	+		EX31_RS15745	0.53	+1.8
1,626	+		EX31_RS15745	0.53	+0.2
1,626	+		EX31_RS15745	0.53	+0.8
1,626	+		EX31_RS15745	0.53	-0.3
1,627	-		EX31_RS15745	0.53	+0.1
1,627	-		EX31_RS15745	0.53	+1.3
1,627	-		EX31_RS15745	0.53	-1.4
1,627	-		EX31_RS15745	0.53	+0.4
1,627	-		EX31_RS15745	0.53	+1.5
1,627	-		EX31_RS15745	0.53	+0.3
1,627	-		EX31_RS15745	0.53	-0.3
1,627	-		EX31_RS15745	0.53	-0.1
1,627	-		EX31_RS15745	0.53	-1.0
1,677	+		EX31_RS15745	0.61	+0.4
1,722	+		EX31_RS15745	0.68	-0.0
1,723	-		EX31_RS15745	0.68	+0.7
1,723	-		EX31_RS15745	0.68	+0.1
1,737	+		EX31_RS15745	0.70	-2.5
1,738	-		EX31_RS15745	0.70	-0.2
1,738	-		EX31_RS15745	0.70	-0.2
1,758	+		EX31_RS15745	0.73	+1.1
1,759	-		EX31_RS15745	0.73	+0.5
1,759	-		EX31_RS15745	0.73	+0.7
1,803	+		EX31_RS15745	0.80	+0.7
1,803	+		EX31_RS15745	0.80	-0.7
1,856	+		EX31_RS15745	0.88	+0.3
1,857	-		EX31_RS15745	0.88	+0.5
1,936	+				+1.2
1,946	+				-0.5
1,946	+				-0.5
1,963	-				+1.1
1,973	-				+0.6
1,974	+				+0.5
1,975	-				-0.5
1,975	-				+0.3
1,979	-				-0.5
2,014	+		EX31_RS15750	0.13	+0.6
2,015	-		EX31_RS15750	0.13	-1.0
2,015	-		EX31_RS15750	0.13	+0.3
2,015	-		EX31_RS15750	0.13	-0.4
2,030	+		EX31_RS15750	0.15	-0.3
2,030	+		EX31_RS15750	0.15	-0.5
2,033	-		EX31_RS15750	0.15	-0.7
2,068	-		EX31_RS15750	0.20	-0.5
2,076	+		EX31_RS15750	0.21	+1.8
2,080	+		EX31_RS15750	0.22	-0.0
2,083	+		EX31_RS15750	0.22	-1.5
2,106	+		EX31_RS15750	0.25	+0.2
2,116	+		EX31_RS15750	0.27	+0.6
2,116	+		EX31_RS15750	0.27	-0.3
2,183	+		EX31_RS15750	0.36	+1.2
2,208	-		EX31_RS15750	0.39	+1.1
2,266	+		EX31_RS15750	0.47	-0.3
2,266	+		EX31_RS15750	0.47	+0.7
2,267	-		EX31_RS15750	0.48	-2.2
2,268	+		EX31_RS15750	0.48	-0.1
2,268	+		EX31_RS15750	0.48	-0.7
2,268	+		EX31_RS15750	0.48	-1.1
2,268	+		EX31_RS15750	0.48	-1.1
2,269	-		EX31_RS15750	0.48	+0.1
2,269	-		EX31_RS15750	0.48	-0.5
2,269	-		EX31_RS15750	0.48	+0.4
2,269	-		EX31_RS15750	0.48	-0.1
2,269	-		EX31_RS15750	0.48	+0.2
2,346	+		EX31_RS15750	0.58	+1.8
2,351	+		EX31_RS15750	0.59	-1.7
2,351	+		EX31_RS15750	0.59	-0.5
2,351	+		EX31_RS15750	0.59	+1.5
2,351	+		EX31_RS15750	0.59	-2.9
2,351	+		EX31_RS15750	0.59	-0.2
2,352	-		EX31_RS15750	0.59	-1.2
2,353	+		EX31_RS15750	0.59	+0.5
2,353	+		EX31_RS15750	0.59	+1.0
2,354	-		EX31_RS15750	0.60	-0.3
2,354	-		EX31_RS15750	0.60	+0.2
2,354	-		EX31_RS15750	0.60	-1.9
2,354	-		EX31_RS15750	0.60	+0.4
2,453	+		EX31_RS15750	0.73	-0.3
2,455	+		EX31_RS15750	0.73	-0.2
2,458	-		EX31_RS15750	0.74	-0.2
2,491	+		EX31_RS15750	0.78	+0.3
2,493	+		EX31_RS15750	0.79	+0.6
2,493	+		EX31_RS15750	0.79	+1.0
2,493	+		EX31_RS15750	0.79	+0.0
2,493	+		EX31_RS15750	0.79	+1.2
2,494	-		EX31_RS15750	0.79	+1.1
2,494	-		EX31_RS15750	0.79	-1.0
2,494	-		EX31_RS15750	0.79	+0.8
2,494	-		EX31_RS15750	0.79	-0.5
2,496	+		EX31_RS15750	0.79	+0.5
2,506	+		EX31_RS15750	0.80	+0.3
2,507	-		EX31_RS15750	0.81	+0.7
2,507	-		EX31_RS15750	0.81	-0.1
2,535	+		EX31_RS15750	0.84	+1.5
2,535	+		EX31_RS15750	0.84	+0.7
2,535	+		EX31_RS15750	0.84	+0.2
2,536	-		EX31_RS15750	0.85	+0.4
2,536	-		EX31_RS15750	0.85	+1.3
2,554	+		EX31_RS15750	0.87	-0.8
2,572	+		EX31_RS15750	0.90	-0.3
2,585	+				+0.4
2,830	+				-0.5
2,833	-				+1.0
2,875	+				-1.6
2,905	-				+0.1
2,946	-		EX31_RS15755	0.12	+1.0
3,137	-		EX31_RS15755	0.35	-1.5
3,263	+		EX31_RS15755	0.50	+1.6
3,283	-		EX31_RS15755	0.53	-0.2
3,300	-		EX31_RS15755	0.55	+0.5
3,303	+		EX31_RS15755	0.55	+0.7
3,305	+		EX31_RS15755	0.55	+0.0
3,320	+		EX31_RS15755	0.57	-1.0
3,321	-		EX31_RS15755	0.57	-2.2
3,389	-		EX31_RS15755	0.65	+1.0
3,402	-		EX31_RS15755	0.67	-1.5
3,502	-		EX31_RS15755	0.79	-1.0
3,506	+		EX31_RS15755	0.80	-1.3
3,509	-		EX31_RS15755	0.80	-0.4
3,545	+		EX31_RS15755	0.84	+0.8
3,610	+				-0.2
3,611	-				+1.7