Strain Fitness in Rahnella sp. WP5 around EX31_RS13955

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13950 and EX31_RS13955 overlap by 4 nucleotidesEX31_RS13955 and EX31_RS13960 are separated by 50 nucleotides EX31_RS13950: EX31_RS13950 - hemin-degrading factor, at 53,703 to 54,740 _RS13950 EX31_RS13955: EX31_RS13955 - ABC transporter substrate-binding protein, at 54,737 to 55,567 _RS13955 EX31_RS13960: EX31_RS13960 - iron ABC transporter permease, at 55,618 to 56,592 _RS13960 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2 3at 53.760 kb on + strandat 53.760 kb on + strandat 53.761 kb on - strandat 53.761 kb on - strandat 53.816 kb on - strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.120 kb on + strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.121 kb on - strand, within EX31_RS13950at 54.122 kb on + strand, within EX31_RS13950at 54.122 kb on + strand, within EX31_RS13950at 54.341 kb on + strand, within EX31_RS13950at 54.397 kb on + strand, within EX31_RS13950at 54.442 kb on + strand, within EX31_RS13950at 54.635 kb on + strand, within EX31_RS13950at 54.717 kb on - strandat 54.889 kb on + strand, within EX31_RS13955at 54.935 kb on + strand, within EX31_RS13955at 54.935 kb on + strand, within EX31_RS13955at 54.936 kb on - strand, within EX31_RS13955at 54.938 kb on - strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.023 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.160 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.243 kb on + strand, within EX31_RS13955at 55.244 kb on - strand, within EX31_RS13955at 55.244 kb on - strand, within EX31_RS13955at 55.261 kb on + strand, within EX31_RS13955at 55.378 kb on - strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.444 kb on + strand, within EX31_RS13955at 55.445 kb on - strand, within EX31_RS13955at 55.489 kb on + strandat 55.489 kb on + strandat 55.569 kb on + strandat 55.722 kb on + strand, within EX31_RS13960at 55.722 kb on + strand, within EX31_RS13960at 55.896 kb on + strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.937 kb on - strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.945 kb on - strand, within EX31_RS13960at 55.993 kb on - strand, within EX31_RS13960at 56.030 kb on + strand, within EX31_RS13960at 56.089 kb on + strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.111 kb on + strand, within EX31_RS13960at 56.235 kb on + strand, within EX31_RS13960at 56.246 kb on + strand, within EX31_RS13960at 56.247 kb on - strand, within EX31_RS13960at 56.266 kb on + strand, within EX31_RS13960at 56.267 kb on - strand, within EX31_RS13960at 56.303 kb on + strand, within EX31_RS13960at 56.423 kb on + strand, within EX31_RS13960at 56.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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53,760 + +0.9
53,760 + +0.9
53,761 - -1.4
53,761 - -0.3
53,816 - EX31_RS13950 0.11 +0.9
54,120 + EX31_RS13950 0.40 +2.1
54,120 + EX31_RS13950 0.40 -1.7
54,120 + EX31_RS13950 0.40 +0.5
54,121 - EX31_RS13950 0.40 +0.3
54,121 - EX31_RS13950 0.40 -0.2
54,121 - EX31_RS13950 0.40 -0.0
54,122 + EX31_RS13950 0.40 +0.9
54,122 + EX31_RS13950 0.40 +1.9
54,341 + EX31_RS13950 0.61 +0.7
54,397 + EX31_RS13950 0.67 -0.7
54,442 + EX31_RS13950 0.71 +1.1
54,635 + EX31_RS13950 0.90 +1.3
54,717 - -0.8
54,889 + EX31_RS13955 0.18 +1.7
54,935 + EX31_RS13955 0.24 +0.9
54,935 + EX31_RS13955 0.24 +1.6
54,936 - EX31_RS13955 0.24 +0.2
54,938 - EX31_RS13955 0.24 -1.4
55,023 + EX31_RS13955 0.34 +0.9
55,023 + EX31_RS13955 0.34 +0.0
55,023 + EX31_RS13955 0.34 +0.9
55,160 + EX31_RS13955 0.51 +2.9
55,160 + EX31_RS13955 0.51 +0.7
55,160 + EX31_RS13955 0.51 -1.0
55,243 + EX31_RS13955 0.61 -0.1
55,243 + EX31_RS13955 0.61 -1.7
55,243 + EX31_RS13955 0.61 +0.2
55,243 + EX31_RS13955 0.61 -0.5
55,244 - EX31_RS13955 0.61 +2.1
55,244 - EX31_RS13955 0.61 +0.5
55,261 + EX31_RS13955 0.63 -1.6
55,378 - EX31_RS13955 0.77 +1.5
55,444 + EX31_RS13955 0.85 +1.1
55,444 + EX31_RS13955 0.85 +1.5
55,444 + EX31_RS13955 0.85 -0.4
55,445 - EX31_RS13955 0.85 +0.3
55,489 + +1.9
55,489 + +0.6
55,569 + +0.9
55,722 + EX31_RS13960 0.11 +1.7
55,722 + EX31_RS13960 0.11 -0.1
55,896 + EX31_RS13960 0.29 +0.3
55,899 - EX31_RS13960 0.29 +1.9
55,899 - EX31_RS13960 0.29 -1.7
55,937 - EX31_RS13960 0.33 -1.1
55,944 + EX31_RS13960 0.33 -1.1
55,944 + EX31_RS13960 0.33 -1.9
55,945 - EX31_RS13960 0.34 +0.5
55,993 - EX31_RS13960 0.38 -1.1
56,030 + EX31_RS13960 0.42 +0.6
56,089 + EX31_RS13960 0.48 -0.1
56,090 - EX31_RS13960 0.48 +1.7
56,090 - EX31_RS13960 0.48 +1.5
56,111 + EX31_RS13960 0.51 +1.4
56,235 + EX31_RS13960 0.63 +0.0
56,246 + EX31_RS13960 0.64 +1.0
56,247 - EX31_RS13960 0.65 +1.3
56,266 + EX31_RS13960 0.66 +1.2
56,267 - EX31_RS13960 0.67 +1.7
56,303 + EX31_RS13960 0.70 -1.1
56,423 + EX31_RS13960 0.83 +0.4
56,545 + +1.2

Or see this region's nucleotide sequence