Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13755 and EX31_RS13760 are separated by 127 nucleotides EX31_RS13760 and EX31_RS13765 are separated by 84 nucleotides EX31_RS13765 and EX31_RS13770 are separated by 397 nucleotides EX31_RS13770 and EX31_RS13775 are separated by 113 nucleotides
EX31_RS13755: EX31_RS13755 - pyridoxamine 5'-phosphate oxidase, at 11,219 to 11,884
_RS13755
EX31_RS13760: EX31_RS13760 - hypothetical protein, at 12,012 to 12,323
_RS13760
EX31_RS13765: EX31_RS13765 - anhydro-N-acetylmuramic acid kinase, at 12,408 to 13,526
_RS13765
EX31_RS13770: EX31_RS13770 - glycine zipper 2TM domain-containing protein, at 13,924 to 14,394
_RS13770
EX31_RS13775: EX31_RS13775 - transcriptional regulator SlyA, at 14,508 to 14,942
_RS13775
Position (kb) 12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 11.570 kb on - strand, within EX31_RS13755 at 11.594 kb on - strand, within EX31_RS13755 at 11.643 kb on + strand, within EX31_RS13755 at 11.885 kb on - strand at 11.892 kb on - strand at 11.904 kb on + strand at 11.904 kb on + strand at 11.905 kb on - strand at 11.905 kb on - strand at 11.905 kb on - strand at 11.905 kb on - strand at 12.001 kb on + strand at 12.001 kb on + strand at 12.001 kb on + strand at 12.002 kb on - strand at 12.002 kb on - strand at 12.013 kb on + strand at 12.071 kb on + strand, within EX31_RS13760 at 12.077 kb on + strand, within EX31_RS13760 at 12.092 kb on - strand, within EX31_RS13760 at 12.107 kb on - strand, within EX31_RS13760 at 12.167 kb on + strand, within EX31_RS13760 at 12.167 kb on + strand, within EX31_RS13760 at 12.167 kb on + strand, within EX31_RS13760 at 12.198 kb on - strand, within EX31_RS13760 at 12.198 kb on - strand, within EX31_RS13760 at 12.231 kb on + strand, within EX31_RS13760 at 12.232 kb on - strand, within EX31_RS13760 at 12.302 kb on + strand at 12.350 kb on - strand at 12.358 kb on + strand at 12.358 kb on + strand at 12.358 kb on + strand at 12.358 kb on + strand at 12.358 kb on + strand at 12.358 kb on + strand at 12.359 kb on - strand at 12.359 kb on - strand at 12.359 kb on - strand at 12.362 kb on + strand at 12.362 kb on + strand at 12.363 kb on - strand at 12.393 kb on - strand at 12.794 kb on - strand, within EX31_RS13765 at 12.832 kb on + strand, within EX31_RS13765 at 12.833 kb on - strand, within EX31_RS13765 at 12.864 kb on + strand, within EX31_RS13765 at 12.865 kb on - strand, within EX31_RS13765 at 12.865 kb on - strand, within EX31_RS13765 at 12.902 kb on + strand, within EX31_RS13765 at 12.902 kb on + strand, within EX31_RS13765 at 12.903 kb on - strand, within EX31_RS13765 at 12.907 kb on + strand, within EX31_RS13765 at 12.907 kb on + strand, within EX31_RS13765 at 12.907 kb on + strand, within EX31_RS13765 at 12.907 kb on + strand, within EX31_RS13765 at 12.907 kb on + strand, within EX31_RS13765 at 12.908 kb on - strand, within EX31_RS13765 at 12.908 kb on - strand, within EX31_RS13765 at 12.908 kb on - strand, within EX31_RS13765 at 12.950 kb on + strand, within EX31_RS13765 at 12.950 kb on + strand, within EX31_RS13765 at 12.950 kb on + strand, within EX31_RS13765 at 12.950 kb on + strand, within EX31_RS13765 at 12.951 kb on - strand, within EX31_RS13765 at 13.038 kb on - strand, within EX31_RS13765 at 13.175 kb on + strand, within EX31_RS13765 at 13.190 kb on + strand, within EX31_RS13765 at 13.191 kb on - strand, within EX31_RS13765 at 13.271 kb on + strand, within EX31_RS13765 at 13.272 kb on - strand, within EX31_RS13765 at 13.293 kb on + strand, within EX31_RS13765 at 13.293 kb on + strand, within EX31_RS13765 at 13.293 kb on + strand, within EX31_RS13765 at 13.294 kb on - strand, within EX31_RS13765 at 13.294 kb on - strand, within EX31_RS13765 at 13.294 kb on - strand, within EX31_RS13765 at 13.294 kb on - strand, within EX31_RS13765 at 13.294 kb on - strand, within EX31_RS13765 at 13.317 kb on - strand, within EX31_RS13765 at 13.317 kb on - strand, within EX31_RS13765 at 13.410 kb on - strand, within EX31_RS13765 at 13.420 kb on + strand at 13.420 kb on + strand at 13.421 kb on - strand at 13.464 kb on + strand at 13.510 kb on + strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.526 kb on + strand at 13.526 kb on + strand at 13.527 kb on - strand at 13.527 kb on - strand at 13.530 kb on + strand at 13.530 kb on + strand at 13.530 kb on + strand at 13.530 kb on + strand at 13.530 kb on + strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.531 kb on - strand at 13.539 kb on + strand at 13.540 kb on - strand at 13.540 kb on - strand at 13.540 kb on - strand at 13.569 kb on - strand at 13.583 kb on - strand at 13.583 kb on - strand at 13.583 kb on - strand at 13.590 kb on - strand at 13.627 kb on + strand at 13.628 kb on - strand at 13.704 kb on + strand at 13.704 kb on + strand at 13.724 kb on - strand at 13.749 kb on + strand at 13.768 kb on + strand at 13.769 kb on - strand at 13.771 kb on + strand at 13.771 kb on + strand at 13.771 kb on + strand at 13.774 kb on + strand at 13.774 kb on + strand at 13.774 kb on + strand at 13.775 kb on - strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.794 kb on - strand at 13.794 kb on - strand at 13.795 kb on + strand at 13.795 kb on + strand at 13.796 kb on - strand at 13.796 kb on - strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.798 kb on + strand at 13.799 kb on - strand at 13.799 kb on - strand at 13.799 kb on - strand at 13.799 kb on - strand at 13.799 kb on - strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.817 kb on + strand at 13.818 kb on - strand at 13.818 kb on - strand at 13.818 kb on - strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.822 kb on + strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.823 kb on - strand at 13.824 kb on + strand at 13.824 kb on + strand at 13.824 kb on + strand at 13.824 kb on + strand at 13.824 kb on + strand at 13.824 kb on + strand at 13.825 kb on - strand at 13.825 kb on - strand at 13.825 kb on - strand at 13.825 kb on - strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.896 kb on - strand at 13.907 kb on + strand at 13.907 kb on + strand at 13.907 kb on + strand at 13.907 kb on + strand at 13.907 kb on + strand at 13.907 kb on + strand at 13.908 kb on - strand at 13.908 kb on - strand at 13.908 kb on - strand at 13.908 kb on - strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.919 kb on + strand at 13.919 kb on + strand at 13.919 kb on + strand at 13.919 kb on + strand at 13.920 kb on - strand at 13.920 kb on - strand at 13.923 kb on + strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.929 kb on + strand at 13.929 kb on + strand at 13.929 kb on + strand at 13.930 kb on - strand at 13.987 kb on - strand, within EX31_RS13770 at 14.008 kb on + strand, within EX31_RS13770 at 14.008 kb on + strand, within EX31_RS13770 at 14.008 kb on + strand, within EX31_RS13770 at 14.008 kb on + strand, within EX31_RS13770 at 14.008 kb on + strand, within EX31_RS13770 at 14.047 kb on + strand, within EX31_RS13770 at 14.047 kb on + strand, within EX31_RS13770 at 14.075 kb on + strand, within EX31_RS13770 at 14.175 kb on + strand, within EX31_RS13770 at 14.175 kb on + strand, within EX31_RS13770 at 14.258 kb on + strand, within EX31_RS13770 at 14.373 kb on + strand at 14.373 kb on + strand at 14.373 kb on + strand at 14.373 kb on + strand at 14.373 kb on + strand at 14.373 kb on + strand at 14.373 kb on + strand at 14.374 kb on - strand at 14.453 kb on - strand at 14.453 kb on - strand at 14.453 kb on - strand at 14.495 kb on + strand at 14.495 kb on + strand at 14.496 kb on - strand at 14.496 kb on - strand at 14.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 11,570 - EX31_RS13755 0.53 -1.9 11,594 - EX31_RS13755 0.56 +0.9 11,643 + EX31_RS13755 0.64 +0.9 11,885 - +1.5 11,892 - +0.1 11,904 + -2.1 11,904 + +0.9 11,905 - -0.1 11,905 - +0.2 11,905 - -0.4 11,905 - -0.5 12,001 + +0.5 12,001 + -2.3 12,001 + -1.6 12,002 - -2.3 12,002 - -0.2 12,013 + -0.1 12,071 + EX31_RS13760 0.19 +1.2 12,077 + EX31_RS13760 0.21 +2.5 12,092 - EX31_RS13760 0.26 -0.3 12,107 - EX31_RS13760 0.30 +1.3 12,167 + EX31_RS13760 0.50 -0.8 12,167 + EX31_RS13760 0.50 -1.1 12,167 + EX31_RS13760 0.50 +0.9 12,198 - EX31_RS13760 0.60 +0.6 12,198 - EX31_RS13760 0.60 +0.3 12,231 + EX31_RS13760 0.70 +0.9 12,232 - EX31_RS13760 0.71 -1.3 12,302 + -0.4 12,350 - -0.7 12,358 + +1.4 12,358 + -0.3 12,358 + -0.7 12,358 + -0.1 12,358 + +1.9 12,358 + -2.4 12,359 - -0.7 12,359 - +0.6 12,359 - -1.3 12,362 + -1.7 12,362 + -3.8 12,363 - -1.1 12,393 - -0.5 12,794 - EX31_RS13765 0.34 +2.9 12,832 + EX31_RS13765 0.38 +1.8 12,833 - EX31_RS13765 0.38 +1.0 12,864 + EX31_RS13765 0.41 +1.4 12,865 - EX31_RS13765 0.41 +1.5 12,865 - EX31_RS13765 0.41 -0.1 12,902 + EX31_RS13765 0.44 -1.1 12,902 + EX31_RS13765 0.44 -0.1 12,903 - EX31_RS13765 0.44 +0.5 12,907 + EX31_RS13765 0.45 +1.1 12,907 + EX31_RS13765 0.45 -1.7 12,907 + EX31_RS13765 0.45 +1.4 12,907 + EX31_RS13765 0.45 -1.1 12,907 + EX31_RS13765 0.45 +0.9 12,908 - EX31_RS13765 0.45 +0.7 12,908 - EX31_RS13765 0.45 -0.1 12,908 - EX31_RS13765 0.45 -1.4 12,950 + EX31_RS13765 0.48 +0.5 12,950 + EX31_RS13765 0.48 +0.9 12,950 + EX31_RS13765 0.48 -1.4 12,950 + EX31_RS13765 0.48 +2.9 12,951 - EX31_RS13765 0.49 -1.1 13,038 - EX31_RS13765 0.56 +0.3 13,175 + EX31_RS13765 0.69 +0.2 13,190 + EX31_RS13765 0.70 -1.7 13,191 - EX31_RS13765 0.70 -1.7 13,271 + EX31_RS13765 0.77 +0.6 13,272 - EX31_RS13765 0.77 +0.5 13,293 + EX31_RS13765 0.79 +0.5 13,293 + EX31_RS13765 0.79 +0.9 13,293 + EX31_RS13765 0.79 -0.1 13,294 - EX31_RS13765 0.79 +1.5 13,294 - EX31_RS13765 0.79 +0.9 13,294 - EX31_RS13765 0.79 +0.9 13,294 - EX31_RS13765 0.79 -1.6 13,294 - EX31_RS13765 0.79 -1.8 13,317 - EX31_RS13765 0.81 +1.3 13,317 - EX31_RS13765 0.81 -0.7 13,410 - EX31_RS13765 0.90 -0.9 13,420 + +1.2 13,420 + +0.6 13,421 - +0.9 13,464 + -1.1 13,510 + -0.1 13,511 - +0.6 13,511 - -0.2 13,511 - -0.7 13,511 - -1.9 13,526 + +0.9 13,526 + -1.7 13,527 - -0.3 13,527 - -1.1 13,530 + +1.7 13,530 + -0.1 13,530 + +0.9 13,530 + +0.1 13,530 + -1.1 13,531 - -2.6 13,531 - +1.8 13,531 - -1.4 13,531 - +2.6 13,531 - +2.5 13,531 - -1.2 13,531 - +0.5 13,539 + +0.5 13,540 - +1.3 13,540 - -1.7 13,540 - -0.0 13,569 - -1.2 13,583 - -1.5 13,583 - +1.1 13,583 - +0.6 13,590 - +3.2 13,627 + +0.2 13,628 - -1.4 13,704 + +1.9 13,704 + +1.9 13,724 - -0.0 13,749 + -0.8 13,768 + -0.7 13,769 - -0.7 13,771 + +0.5 13,771 + -2.3 13,771 + -0.8 13,774 + -1.7 13,774 + -0.1 13,774 + +0.1 13,775 - +0.6 13,793 + -0.1 13,793 + +1.1 13,793 + +0.2 13,793 + -1.0 13,793 + -0.1 13,793 + +0.6 13,793 + +1.5 13,793 + +0.9 13,793 + +0.3 13,794 - -0.1 13,794 - -0.1 13,795 + -1.1 13,795 + -2.7 13,796 - +0.5 13,796 - -1.0 13,798 + +0.0 13,798 + -1.7 13,798 + +0.5 13,798 + +0.1 13,798 + +0.9 13,798 + +2.3 13,798 + -0.1 13,798 + +0.2 13,798 + -2.6 13,798 + +1.6 13,799 - -0.5 13,799 - +0.9 13,799 - +0.9 13,799 - -0.7 13,799 - -1.8 13,817 + -0.4 13,817 + +2.7 13,817 + -0.2 13,817 + +0.1 13,817 + -1.4 13,817 + -0.7 13,817 + -0.4 13,817 + -0.7 13,817 + +0.4 13,817 + +0.2 13,817 + +0.2 13,817 + -2.1 13,817 + +0.6 13,817 + -0.0 13,817 + -0.9 13,817 + +1.6 13,818 - +1.2 13,818 - -0.3 13,818 - -0.1 13,822 + -0.0 13,822 + -1.9 13,822 + -2.1 13,822 + -1.0 13,822 + -0.1 13,822 + -0.7 13,822 + +0.1 13,822 + +0.5 13,822 + -0.6 13,822 + -0.1 13,822 + +0.2 13,822 + -0.6 13,822 + +0.4 13,822 + -0.5 13,822 + +0.6 13,822 + +0.3 13,822 + +0.5 13,823 - -2.8 13,823 - +0.9 13,823 - +0.9 13,823 - -0.1 13,823 - +0.9 13,823 - -2.0 13,823 - +0.2 13,824 + +0.3 13,824 + -0.2 13,824 + +0.8 13,824 + +1.7 13,824 + -1.7 13,824 + -0.1 13,825 - +1.3 13,825 - -1.8 13,825 - +1.2 13,825 - -1.7 13,895 + -1.0 13,895 + -0.7 13,895 + +1.4 13,895 + +0.2 13,895 + -1.9 13,895 + +0.5 13,896 - -0.9 13,907 + -1.3 13,907 + -1.3 13,907 + -1.0 13,907 + -2.1 13,907 + -2.3 13,907 + +0.4 13,908 - -1.4 13,908 - -1.7 13,908 - +0.4 13,908 - +0.9 13,910 + +0.1 13,910 + +0.9 13,910 + +1.7 13,910 + -1.4 13,910 + -0.3 13,919 + +1.1 13,919 + -0.6 13,919 + -0.1 13,919 + +0.0 13,920 - +0.7 13,920 - -0.1 13,923 + -0.9 13,924 - +0.9 13,924 - +1.5 13,929 + -0.3 13,929 + -0.9 13,929 + -0.1 13,930 - -0.1 13,987 - EX31_RS13770 0.13 +0.6 14,008 + EX31_RS13770 0.18 +0.2 14,008 + EX31_RS13770 0.18 -1.4 14,008 + EX31_RS13770 0.18 -0.9 14,008 + EX31_RS13770 0.18 +0.4 14,008 + EX31_RS13770 0.18 +2.6 14,047 + EX31_RS13770 0.26 +0.9 14,047 + EX31_RS13770 0.26 -2.0 14,075 + EX31_RS13770 0.32 +0.9 14,175 + EX31_RS13770 0.53 +0.5 14,175 + EX31_RS13770 0.53 -0.2 14,258 + EX31_RS13770 0.71 -1.4 14,373 + -0.8 14,373 + +0.9 14,373 + -0.6 14,373 + -2.6 14,373 + +0.3 14,373 + -1.9 14,373 + +0.4 14,374 - +0.3 14,453 - +0.5 14,453 - -1.9 14,453 - +1.3 14,495 + +0.9 14,495 + +1.5 14,496 - +0.2 14,496 - -0.7 14,496 - -0.1
Or see this region's nucleotide sequence