Strain Fitness in Rahnella sp. WP5 around EX31_RS10775

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10770 and EX31_RS10775 are separated by 80 nucleotidesEX31_RS10775 and EX31_RS10780 are separated by 261 nucleotides EX31_RS10770: EX31_RS10770 - HlyD family secretion protein, at 71,536 to 72,660 _RS10770 EX31_RS10775: EX31_RS10775 - DHA2 family efflux MFS transporter permease subunit, at 72,741 to 74,294 _RS10775 EX31_RS10780: EX31_RS10780 - L,D-transpeptidase family protein, at 74,556 to 75,476 _RS10780 Position (kb) 72 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.835 kb on - strand, within EX31_RS10770at 71.835 kb on - strand, within EX31_RS10770at 71.835 kb on - strand, within EX31_RS10770at 71.835 kb on - strand, within EX31_RS10770at 71.835 kb on - strand, within EX31_RS10770at 71.881 kb on - strand, within EX31_RS10770at 71.885 kb on + strand, within EX31_RS10770at 71.885 kb on + strand, within EX31_RS10770at 71.885 kb on + strand, within EX31_RS10770at 71.886 kb on - strand, within EX31_RS10770at 71.886 kb on - strand, within EX31_RS10770at 71.886 kb on - strand, within EX31_RS10770at 71.886 kb on - strand, within EX31_RS10770at 71.886 kb on - strand, within EX31_RS10770at 71.899 kb on + strand, within EX31_RS10770at 71.900 kb on - strand, within EX31_RS10770at 71.918 kb on - strand, within EX31_RS10770at 71.941 kb on - strand, within EX31_RS10770at 72.132 kb on + strand, within EX31_RS10770at 72.135 kb on - strand, within EX31_RS10770at 72.150 kb on + strand, within EX31_RS10770at 72.151 kb on - strand, within EX31_RS10770at 72.151 kb on - strand, within EX31_RS10770at 72.415 kb on + strand, within EX31_RS10770at 72.415 kb on + strand, within EX31_RS10770at 72.416 kb on - strand, within EX31_RS10770at 72.416 kb on - strand, within EX31_RS10770at 72.461 kb on - strand, within EX31_RS10770at 72.498 kb on - strand, within EX31_RS10770at 72.498 kb on - strand, within EX31_RS10770at 72.617 kb on - strandat 72.833 kb on + strandat 72.833 kb on + strandat 72.834 kb on - strandat 72.940 kb on - strand, within EX31_RS10775at 73.247 kb on - strand, within EX31_RS10775at 73.247 kb on - strand, within EX31_RS10775at 73.247 kb on - strand, within EX31_RS10775at 73.259 kb on - strand, within EX31_RS10775at 73.332 kb on - strand, within EX31_RS10775at 73.332 kb on - strand, within EX31_RS10775at 73.365 kb on - strand, within EX31_RS10775at 73.387 kb on + strand, within EX31_RS10775at 73.387 kb on + strand, within EX31_RS10775at 73.422 kb on + strand, within EX31_RS10775at 73.422 kb on + strand, within EX31_RS10775at 73.423 kb on - strand, within EX31_RS10775at 73.423 kb on - strand, within EX31_RS10775at 73.423 kb on - strand, within EX31_RS10775at 73.549 kb on + strand, within EX31_RS10775at 73.631 kb on + strand, within EX31_RS10775at 73.631 kb on + strand, within EX31_RS10775at 73.631 kb on + strand, within EX31_RS10775at 73.631 kb on + strand, within EX31_RS10775at 73.631 kb on + strand, within EX31_RS10775at 73.632 kb on - strand, within EX31_RS10775at 73.632 kb on - strand, within EX31_RS10775at 73.635 kb on + strand, within EX31_RS10775at 73.636 kb on - strand, within EX31_RS10775at 73.636 kb on - strand, within EX31_RS10775at 73.636 kb on - strand, within EX31_RS10775at 73.636 kb on - strand, within EX31_RS10775at 73.691 kb on + strand, within EX31_RS10775at 73.691 kb on + strand, within EX31_RS10775at 73.692 kb on - strand, within EX31_RS10775at 73.813 kb on + strand, within EX31_RS10775at 73.892 kb on + strand, within EX31_RS10775at 73.892 kb on + strand, within EX31_RS10775at 73.892 kb on + strand, within EX31_RS10775at 73.892 kb on + strand, within EX31_RS10775at 73.892 kb on + strand, within EX31_RS10775at 73.893 kb on - strand, within EX31_RS10775at 73.893 kb on - strand, within EX31_RS10775at 74.022 kb on - strand, within EX31_RS10775at 74.270 kb on + strandat 74.292 kb on + strandat 74.292 kb on + strandat 74.293 kb on - strandat 74.393 kb on + strandat 74.401 kb on + strandat 74.404 kb on - strandat 74.407 kb on + strandat 74.407 kb on + strandat 74.408 kb on - strandat 74.437 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.458 kb on + strandat 74.459 kb on - strandat 74.459 kb on - strandat 74.459 kb on - strandat 74.468 kb on + strandat 74.468 kb on + strandat 74.468 kb on + strandat 74.468 kb on + strandat 74.469 kb on - strandat 74.469 kb on - strandat 74.469 kb on - strandat 74.473 kb on + strandat 74.473 kb on + strandat 74.473 kb on + strandat 74.473 kb on + strandat 74.473 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.608 kb on - strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.609 kb on + strandat 74.634 kb on + strandat 74.684 kb on + strand, within EX31_RS10780at 74.684 kb on + strand, within EX31_RS10780at 74.684 kb on + strand, within EX31_RS10780at 74.684 kb on + strand, within EX31_RS10780at 74.684 kb on + strand, within EX31_RS10780at 74.684 kb on + strand, within EX31_RS10780at 74.685 kb on - strand, within EX31_RS10780at 74.685 kb on - strand, within EX31_RS10780at 74.765 kb on + strand, within EX31_RS10780at 74.765 kb on + strand, within EX31_RS10780at 74.886 kb on + strand, within EX31_RS10780at 74.886 kb on + strand, within EX31_RS10780at 74.886 kb on + strand, within EX31_RS10780at 74.886 kb on + strand, within EX31_RS10780at 74.887 kb on - strand, within EX31_RS10780at 74.889 kb on + strand, within EX31_RS10780at 74.889 kb on + strand, within EX31_RS10780at 74.889 kb on + strand, within EX31_RS10780at 74.890 kb on - strand, within EX31_RS10780at 74.890 kb on - strand, within EX31_RS10780at 74.890 kb on - strand, within EX31_RS10780at 74.909 kb on + strand, within EX31_RS10780at 74.909 kb on + strand, within EX31_RS10780at 74.909 kb on + strand, within EX31_RS10780at 74.987 kb on + strand, within EX31_RS10780at 75.036 kb on + strand, within EX31_RS10780at 75.036 kb on + strand, within EX31_RS10780at 75.036 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.111 kb on + strand, within EX31_RS10780at 75.126 kb on + strand, within EX31_RS10780at 75.126 kb on + strand, within EX31_RS10780

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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71,835 - EX31_RS10770 0.27 +1.0
71,835 - EX31_RS10770 0.27 +0.7
71,835 - EX31_RS10770 0.27 -0.2
71,835 - EX31_RS10770 0.27 +0.8
71,835 - EX31_RS10770 0.27 +1.4
71,881 - EX31_RS10770 0.31 -0.4
71,885 + EX31_RS10770 0.31 -0.6
71,885 + EX31_RS10770 0.31 +0.0
71,885 + EX31_RS10770 0.31 +0.0
71,886 - EX31_RS10770 0.31 +1.2
71,886 - EX31_RS10770 0.31 +0.6
71,886 - EX31_RS10770 0.31 -2.4
71,886 - EX31_RS10770 0.31 -1.8
71,886 - EX31_RS10770 0.31 +1.0
71,899 + EX31_RS10770 0.32 -1.1
71,900 - EX31_RS10770 0.32 -0.2
71,918 - EX31_RS10770 0.34 +1.0
71,941 - EX31_RS10770 0.36 -1.6
72,132 + EX31_RS10770 0.53 +0.0
72,135 - EX31_RS10770 0.53 +1.8
72,150 + EX31_RS10770 0.55 +1.0
72,151 - EX31_RS10770 0.55 +3.3
72,151 - EX31_RS10770 0.55 -0.6
72,415 + EX31_RS10770 0.78 +0.2
72,415 + EX31_RS10770 0.78 +0.0
72,416 - EX31_RS10770 0.78 +0.5
72,416 - EX31_RS10770 0.78 -2.2
72,461 - EX31_RS10770 0.82 +1.0
72,498 - EX31_RS10770 0.86 -0.6
72,498 - EX31_RS10770 0.86 +1.4
72,617 - +0.7
72,833 + +0.6
72,833 + -0.6
72,834 - +0.0
72,940 - EX31_RS10775 0.13 -0.6
73,247 - EX31_RS10775 0.33 +1.0
73,247 - EX31_RS10775 0.33 +0.5
73,247 - EX31_RS10775 0.33 +2.2
73,259 - EX31_RS10775 0.33 -0.3
73,332 - EX31_RS10775 0.38 +3.6
73,332 - EX31_RS10775 0.38 -1.3
73,365 - EX31_RS10775 0.40 -0.2
73,387 + EX31_RS10775 0.42 -0.7
73,387 + EX31_RS10775 0.42 -1.0
73,422 + EX31_RS10775 0.44 +1.4
73,422 + EX31_RS10775 0.44 +1.4
73,423 - EX31_RS10775 0.44 -1.0
73,423 - EX31_RS10775 0.44 +1.0
73,423 - EX31_RS10775 0.44 +0.8
73,549 + EX31_RS10775 0.52 +0.0
73,631 + EX31_RS10775 0.57 -1.3
73,631 + EX31_RS10775 0.57 -0.1
73,631 + EX31_RS10775 0.57 -2.3
73,631 + EX31_RS10775 0.57 +1.0
73,631 + EX31_RS10775 0.57 -2.0
73,632 - EX31_RS10775 0.57 -0.1
73,632 - EX31_RS10775 0.57 -1.9
73,635 + EX31_RS10775 0.58 +1.2
73,636 - EX31_RS10775 0.58 +1.0
73,636 - EX31_RS10775 0.58 +0.1
73,636 - EX31_RS10775 0.58 +1.8
73,636 - EX31_RS10775 0.58 +1.0
73,691 + EX31_RS10775 0.61 +0.8
73,691 + EX31_RS10775 0.61 +0.4
73,692 - EX31_RS10775 0.61 -1.6
73,813 + EX31_RS10775 0.69 +1.0
73,892 + EX31_RS10775 0.74 -1.0
73,892 + EX31_RS10775 0.74 +0.3
73,892 + EX31_RS10775 0.74 +2.2
73,892 + EX31_RS10775 0.74 +1.0
73,892 + EX31_RS10775 0.74 +0.4
73,893 - EX31_RS10775 0.74 +0.2
73,893 - EX31_RS10775 0.74 +1.0
74,022 - EX31_RS10775 0.82 -0.6
74,270 + +0.1
74,292 + +2.2
74,292 + +0.7
74,293 - +0.0
74,393 + +0.0
74,401 + +0.1
74,404 - -1.0
74,407 + -0.4
74,407 + +0.1
74,408 - +0.0
74,437 + -0.3
74,458 + +0.5
74,458 + +1.0
74,458 + +1.7
74,458 + +0.0
74,458 + -0.3
74,458 + +0.4
74,458 + +0.9
74,458 + +1.6
74,458 + -2.1
74,458 + -1.3
74,458 + +0.0
74,458 + +1.0
74,458 + +1.5
74,459 - -0.7
74,459 - +0.0
74,459 - -0.6
74,468 + +0.3
74,468 + -0.3
74,468 + +1.3
74,468 + -0.9
74,469 - +0.3
74,469 - -1.2
74,469 - +0.6
74,473 + -1.8
74,473 + -0.4
74,473 + -0.3
74,473 + +0.2
74,473 + +1.0
74,607 + -0.6
74,607 + -1.2
74,607 + -1.0
74,607 + +0.6
74,607 + +0.1
74,608 - +2.3
74,609 + -0.6
74,609 + -0.2
74,609 + -0.2
74,609 + -0.4
74,634 + -0.3
74,684 + EX31_RS10780 0.14 +0.7
74,684 + EX31_RS10780 0.14 +0.2
74,684 + EX31_RS10780 0.14 +0.9
74,684 + EX31_RS10780 0.14 +0.6
74,684 + EX31_RS10780 0.14 +0.6
74,684 + EX31_RS10780 0.14 -0.3
74,685 - EX31_RS10780 0.14 -1.3
74,685 - EX31_RS10780 0.14 +0.0
74,765 + EX31_RS10780 0.23 -0.9
74,765 + EX31_RS10780 0.23 -1.4
74,886 + EX31_RS10780 0.36 -0.6
74,886 + EX31_RS10780 0.36 -0.3
74,886 + EX31_RS10780 0.36 -2.4
74,886 + EX31_RS10780 0.36 +1.2
74,887 - EX31_RS10780 0.36 +1.0
74,889 + EX31_RS10780 0.36 +2.1
74,889 + EX31_RS10780 0.36 +0.6
74,889 + EX31_RS10780 0.36 +0.0
74,890 - EX31_RS10780 0.36 -1.6
74,890 - EX31_RS10780 0.36 -0.4
74,890 - EX31_RS10780 0.36 -0.8
74,909 + EX31_RS10780 0.38 +1.7
74,909 + EX31_RS10780 0.38 +0.0
74,909 + EX31_RS10780 0.38 -0.8
74,987 + EX31_RS10780 0.47 +0.2
75,036 + EX31_RS10780 0.52 +1.3
75,036 + EX31_RS10780 0.52 +0.6
75,036 + EX31_RS10780 0.52 +0.3
75,111 + EX31_RS10780 0.60 +0.8
75,111 + EX31_RS10780 0.60 +2.3
75,111 + EX31_RS10780 0.60 -0.4
75,111 + EX31_RS10780 0.60 +1.0
75,111 + EX31_RS10780 0.60 -0.7
75,111 + EX31_RS10780 0.60 -0.7
75,111 + EX31_RS10780 0.60 -2.4
75,126 + EX31_RS10780 0.62 -2.4
75,126 + EX31_RS10780 0.62 +1.3

Or see this region's nucleotide sequence