Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10265 and EX31_RS10270 overlap by 1 nucleotides EX31_RS10270 and EX31_RS10275 are separated by 22 nucleotides
EX31_RS10265: EX31_RS10265 - alpha-glucosidase, at 265,006 to 266,664
_RS10265
EX31_RS10270: EX31_RS10270 - alpha-glucosidase, at 266,664 to 268,319
_RS10270
EX31_RS10275: EX31_RS10275 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 268,342 to 269,451
_RS10275
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 265.694 kb on + strand, within EX31_RS10265 at 265.695 kb on - strand, within EX31_RS10265 at 265.695 kb on - strand, within EX31_RS10265 at 265.695 kb on - strand, within EX31_RS10265 at 265.747 kb on - strand, within EX31_RS10265 at 265.754 kb on - strand, within EX31_RS10265 at 265.814 kb on - strand, within EX31_RS10265 at 265.958 kb on + strand, within EX31_RS10265 at 265.958 kb on + strand, within EX31_RS10265 at 265.976 kb on + strand, within EX31_RS10265 at 266.006 kb on + strand, within EX31_RS10265 at 266.068 kb on - strand, within EX31_RS10265 at 266.123 kb on + strand, within EX31_RS10265 at 266.188 kb on + strand, within EX31_RS10265 at 266.189 kb on - strand, within EX31_RS10265 at 266.216 kb on + strand, within EX31_RS10265 at 266.291 kb on + strand, within EX31_RS10265 at 266.291 kb on + strand, within EX31_RS10265 at 266.292 kb on - strand, within EX31_RS10265 at 266.358 kb on + strand, within EX31_RS10265 at 266.358 kb on + strand, within EX31_RS10265 at 266.358 kb on + strand, within EX31_RS10265 at 266.359 kb on - strand, within EX31_RS10265 at 266.465 kb on + strand, within EX31_RS10265 at 266.507 kb on + strand at 266.508 kb on - strand at 266.553 kb on - strand at 266.624 kb on + strand at 266.624 kb on + strand at 266.682 kb on + strand at 266.934 kb on - strand, within EX31_RS10270 at 266.934 kb on - strand, within EX31_RS10270 at 267.012 kb on - strand, within EX31_RS10270 at 267.013 kb on + strand, within EX31_RS10270 at 267.014 kb on - strand, within EX31_RS10270 at 267.051 kb on - strand, within EX31_RS10270 at 267.256 kb on + strand, within EX31_RS10270 at 267.595 kb on - strand, within EX31_RS10270 at 267.640 kb on + strand, within EX31_RS10270 at 267.657 kb on - strand, within EX31_RS10270 at 267.774 kb on + strand, within EX31_RS10270 at 267.775 kb on - strand, within EX31_RS10270 at 267.775 kb on - strand, within EX31_RS10270 at 267.775 kb on - strand, within EX31_RS10270 at 267.775 kb on - strand, within EX31_RS10270 at 267.775 kb on - strand, within EX31_RS10270 at 267.829 kb on + strand, within EX31_RS10270 at 267.830 kb on - strand, within EX31_RS10270 at 267.832 kb on + strand, within EX31_RS10270 at 267.833 kb on - strand, within EX31_RS10270 at 267.932 kb on - strand, within EX31_RS10270 at 267.932 kb on - strand, within EX31_RS10270 at 267.944 kb on - strand, within EX31_RS10270 at 268.020 kb on - strand, within EX31_RS10270 at 268.097 kb on + strand, within EX31_RS10270 at 268.120 kb on + strand, within EX31_RS10270 at 268.121 kb on - strand, within EX31_RS10270 at 268.273 kb on + strand at 268.310 kb on + strand at 268.311 kb on - strand at 268.344 kb on - strand at 268.397 kb on + strand at 268.505 kb on + strand, within EX31_RS10275 at 268.505 kb on + strand, within EX31_RS10275 at 268.506 kb on - strand, within EX31_RS10275 at 268.506 kb on - strand, within EX31_RS10275 at 268.587 kb on + strand, within EX31_RS10275 at 268.603 kb on - strand, within EX31_RS10275 at 268.784 kb on + strand, within EX31_RS10275 at 268.839 kb on + strand, within EX31_RS10275 at 268.840 kb on - strand, within EX31_RS10275 at 268.840 kb on - strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 269.087 kb on - strand, within EX31_RS10275 at 269.091 kb on + strand, within EX31_RS10275 at 269.091 kb on + strand, within EX31_RS10275 at 269.164 kb on - strand, within EX31_RS10275 at 269.164 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.209 kb on + strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.252 kb on + strand, within EX31_RS10275 at 269.252 kb on + strand, within EX31_RS10275 at 269.253 kb on - strand, within EX31_RS10275 at 269.253 kb on - strand, within EX31_RS10275 at 269.266 kb on - strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.314 kb on + strand, within EX31_RS10275 at 269.315 kb on - strand, within EX31_RS10275 at 269.315 kb on - strand, within EX31_RS10275
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 265,694 + EX31_RS10265 0.41 +2.9 265,695 - EX31_RS10265 0.42 -0.3 265,695 - EX31_RS10265 0.42 -1.7 265,695 - EX31_RS10265 0.42 -0.4 265,747 - EX31_RS10265 0.45 -0.0 265,754 - EX31_RS10265 0.45 +0.6 265,814 - EX31_RS10265 0.49 +0.9 265,958 + EX31_RS10265 0.57 -0.1 265,958 + EX31_RS10265 0.57 -2.3 265,976 + EX31_RS10265 0.58 -1.3 266,006 + EX31_RS10265 0.60 -0.1 266,068 - EX31_RS10265 0.64 +1.5 266,123 + EX31_RS10265 0.67 -1.9 266,188 + EX31_RS10265 0.71 -0.9 266,189 - EX31_RS10265 0.71 +1.7 266,216 + EX31_RS10265 0.73 -0.3 266,291 + EX31_RS10265 0.77 +1.2 266,291 + EX31_RS10265 0.77 -0.8 266,292 - EX31_RS10265 0.78 -0.5 266,358 + EX31_RS10265 0.81 +1.5 266,358 + EX31_RS10265 0.81 +1.3 266,358 + EX31_RS10265 0.81 -0.5 266,359 - EX31_RS10265 0.82 -1.1 266,465 + EX31_RS10265 0.88 +0.3 266,507 + -0.9 266,508 - -0.1 266,553 - -0.0 266,624 + +2.2 266,624 + -1.1 266,682 + +2.5 266,934 - EX31_RS10270 0.16 +2.5 266,934 - EX31_RS10270 0.16 +0.9 267,012 - EX31_RS10270 0.21 -0.1 267,013 + EX31_RS10270 0.21 +0.1 267,014 - EX31_RS10270 0.21 +1.9 267,051 - EX31_RS10270 0.23 -1.9 267,256 + EX31_RS10270 0.36 +0.9 267,595 - EX31_RS10270 0.56 -0.7 267,640 + EX31_RS10270 0.59 +1.3 267,657 - EX31_RS10270 0.60 -0.1 267,774 + EX31_RS10270 0.67 -0.1 267,775 - EX31_RS10270 0.67 +1.9 267,775 - EX31_RS10270 0.67 -3.3 267,775 - EX31_RS10270 0.67 -0.3 267,775 - EX31_RS10270 0.67 -1.5 267,775 - EX31_RS10270 0.67 +0.2 267,829 + EX31_RS10270 0.70 +0.9 267,830 - EX31_RS10270 0.70 -0.6 267,832 + EX31_RS10270 0.71 -1.3 267,833 - EX31_RS10270 0.71 -1.1 267,932 - EX31_RS10270 0.77 +0.3 267,932 - EX31_RS10270 0.77 -0.9 267,944 - EX31_RS10270 0.77 +1.9 268,020 - EX31_RS10270 0.82 +0.1 268,097 + EX31_RS10270 0.87 +0.9 268,120 + EX31_RS10270 0.88 +0.5 268,121 - EX31_RS10270 0.88 -0.1 268,273 + +1.5 268,310 + -0.1 268,311 - -0.5 268,344 - +1.5 268,397 + +0.5 268,505 + EX31_RS10275 0.15 -1.5 268,505 + EX31_RS10275 0.15 +0.1 268,506 - EX31_RS10275 0.15 -0.7 268,506 - EX31_RS10275 0.15 +1.9 268,587 + EX31_RS10275 0.22 +0.9 268,603 - EX31_RS10275 0.24 +0.9 268,784 + EX31_RS10275 0.40 +1.6 268,839 + EX31_RS10275 0.45 +1.5 268,840 - EX31_RS10275 0.45 +1.0 268,840 - EX31_RS10275 0.45 +1.1 268,883 + EX31_RS10275 0.49 +0.2 268,883 + EX31_RS10275 0.49 -0.4 268,883 + EX31_RS10275 0.49 -1.3 268,884 - EX31_RS10275 0.49 -0.2 268,884 - EX31_RS10275 0.49 +2.2 268,884 - EX31_RS10275 0.49 +0.6 268,884 - EX31_RS10275 0.49 -0.1 268,884 - EX31_RS10275 0.49 +0.3 268,884 - EX31_RS10275 0.49 -1.9 268,884 - EX31_RS10275 0.49 -0.7 268,884 - EX31_RS10275 0.49 -0.5 268,888 - EX31_RS10275 0.49 -0.5 268,888 - EX31_RS10275 0.49 +1.9 268,888 - EX31_RS10275 0.49 -1.1 268,888 - EX31_RS10275 0.49 -2.1 269,087 - EX31_RS10275 0.67 +0.7 269,091 + EX31_RS10275 0.67 -0.7 269,091 + EX31_RS10275 0.67 -1.9 269,164 - EX31_RS10275 0.74 -1.7 269,164 - EX31_RS10275 0.74 +0.9 269,199 - EX31_RS10275 0.77 +2.7 269,199 - EX31_RS10275 0.77 +1.9 269,199 - EX31_RS10275 0.77 +0.9 269,209 + EX31_RS10275 0.78 -1.7 269,210 - EX31_RS10275 0.78 +2.3 269,210 - EX31_RS10275 0.78 -0.1 269,210 - EX31_RS10275 0.78 -1.8 269,252 + EX31_RS10275 0.82 -0.3 269,252 + EX31_RS10275 0.82 -1.7 269,253 - EX31_RS10275 0.82 -0.2 269,253 - EX31_RS10275 0.82 -1.5 269,266 - EX31_RS10275 0.83 +0.1 269,267 + EX31_RS10275 0.83 +0.2 269,267 + EX31_RS10275 0.83 +0.9 269,267 + EX31_RS10275 0.83 +0.9 269,267 + EX31_RS10275 0.83 +1.6 269,267 + EX31_RS10275 0.83 +0.9 269,267 + EX31_RS10275 0.83 -0.1 269,267 + EX31_RS10275 0.83 -0.3 269,268 - EX31_RS10275 0.83 -0.8 269,268 - EX31_RS10275 0.83 +0.3 269,268 - EX31_RS10275 0.83 +0.9 269,268 - EX31_RS10275 0.83 +0.4 269,268 - EX31_RS10275 0.83 +0.5 269,268 - EX31_RS10275 0.83 -0.1 269,268 - EX31_RS10275 0.83 +0.5 269,268 - EX31_RS10275 0.83 +0.9 269,268 - EX31_RS10275 0.83 -0.1 269,268 - EX31_RS10275 0.83 -0.1 269,268 - EX31_RS10275 0.83 -1.1 269,268 - EX31_RS10275 0.83 -0.7 269,284 + EX31_RS10275 0.85 +0.5 269,284 + EX31_RS10275 0.85 -0.1 269,284 + EX31_RS10275 0.85 -1.1 269,285 - EX31_RS10275 0.85 +0.5 269,285 - EX31_RS10275 0.85 +1.2 269,285 - EX31_RS10275 0.85 +0.9 269,314 + EX31_RS10275 0.88 +0.1 269,315 - EX31_RS10275 0.88 -0.1 269,315 - EX31_RS10275 0.88 +2.3
Or see this region's nucleotide sequence