Strain Fitness in Rahnella sp. WP5 around EX31_RS10260

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10250 and EX31_RS10255 are separated by 394 nucleotidesEX31_RS10255 and EX31_RS10260 are separated by 70 nucleotidesEX31_RS10260 and EX31_RS10265 overlap by 4 nucleotides EX31_RS10250: EX31_RS10250 - MurR/RpiR family transcriptional regulator, at 263,402 to 264,274 _RS10250 EX31_RS10255: EX31_RS10255 - tRNA-Asn, at 264,669 to 264,744 _RS10255 EX31_RS10260: EX31_RS10260 - hypothetical protein, at 264,815 to 265,009 _RS10260 EX31_RS10265: EX31_RS10265 - alpha-glucosidase, at 265,006 to 266,664 _RS10265 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 263.913 kb on + strand, within EX31_RS10250at 264.328 kb on - strandat 264.328 kb on - strandat 264.359 kb on - strandat 264.359 kb on - strandat 264.453 kb on - strandat 264.505 kb on + strandat 264.550 kb on + strandat 264.745 kb on + strandat 264.745 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.792 kb on + strandat 264.793 kb on - strandat 264.793 kb on - strandat 264.815 kb on - strandat 264.846 kb on + strand, within EX31_RS10260at 264.931 kb on + strand, within EX31_RS10260at 264.977 kb on + strand, within EX31_RS10260at 264.977 kb on + strand, within EX31_RS10260at 264.978 kb on - strand, within EX31_RS10260at 265.008 kb on - strandat 265.017 kb on - strandat 265.067 kb on + strandat 265.067 kb on + strandat 265.067 kb on + strandat 265.068 kb on - strandat 265.068 kb on - strandat 265.072 kb on - strandat 265.079 kb on - strandat 265.177 kb on - strand, within EX31_RS10265at 265.184 kb on + strand, within EX31_RS10265at 265.190 kb on + strand, within EX31_RS10265at 265.190 kb on + strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.223 kb on + strand, within EX31_RS10265at 265.223 kb on + strand, within EX31_RS10265at 265.224 kb on - strand, within EX31_RS10265at 265.224 kb on - strand, within EX31_RS10265at 265.299 kb on + strand, within EX31_RS10265at 265.389 kb on + strand, within EX31_RS10265at 265.572 kb on - strand, within EX31_RS10265at 265.575 kb on + strand, within EX31_RS10265at 265.575 kb on + strand, within EX31_RS10265at 265.601 kb on + strand, within EX31_RS10265at 265.602 kb on - strand, within EX31_RS10265at 265.606 kb on - strand, within EX31_RS10265at 265.694 kb on + strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.695 kb on - strand, within EX31_RS10265at 265.747 kb on - strand, within EX31_RS10265at 265.754 kb on - strand, within EX31_RS10265at 265.814 kb on - strand, within EX31_RS10265at 265.958 kb on + strand, within EX31_RS10265at 265.958 kb on + strand, within EX31_RS10265at 265.976 kb on + strand, within EX31_RS10265at 266.006 kb on + strand, within EX31_RS10265

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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263,913 + EX31_RS10250 0.59 +1.9
264,328 - -1.5
264,328 - -1.5
264,359 - +0.9
264,359 - +0.9
264,453 - -0.1
264,505 + +2.5
264,550 + +1.9
264,745 + -0.2
264,745 + -0.3
264,748 + +0.3
264,748 + -1.1
264,748 + -0.9
264,748 + -0.5
264,748 + -2.6
264,748 + +0.6
264,748 + +0.6
264,748 + -0.5
264,748 + +0.1
264,748 + -0.0
264,748 + +0.5
264,748 + +0.3
264,792 + +1.1
264,793 - +0.9
264,793 - +0.9
264,815 - +0.9
264,846 + EX31_RS10260 0.16 -1.5
264,931 + EX31_RS10260 0.59 -0.1
264,977 + EX31_RS10260 0.83 -1.1
264,977 + EX31_RS10260 0.83 -1.5
264,978 - EX31_RS10260 0.84 -2.5
265,008 - +0.9
265,017 - +0.7
265,067 + +1.3
265,067 + -1.1
265,067 + +0.9
265,068 - +0.4
265,068 - -0.1
265,072 - +1.1
265,079 - -0.3
265,177 - EX31_RS10265 0.10 +2.7
265,184 + EX31_RS10265 0.11 -1.1
265,190 + EX31_RS10265 0.11 -0.1
265,190 + EX31_RS10265 0.11 +0.9
265,191 - EX31_RS10265 0.11 +0.9
265,191 - EX31_RS10265 0.11 +0.3
265,191 - EX31_RS10265 0.11 -0.7
265,191 - EX31_RS10265 0.11 -1.7
265,223 + EX31_RS10265 0.13 -0.9
265,223 + EX31_RS10265 0.13 +0.2
265,224 - EX31_RS10265 0.13 -1.1
265,224 - EX31_RS10265 0.13 +0.9
265,299 + EX31_RS10265 0.18 +0.9
265,389 + EX31_RS10265 0.23 -2.3
265,572 - EX31_RS10265 0.34 -0.9
265,575 + EX31_RS10265 0.34 -1.1
265,575 + EX31_RS10265 0.34 +1.5
265,601 + EX31_RS10265 0.36 +1.5
265,602 - EX31_RS10265 0.36 -0.5
265,606 - EX31_RS10265 0.36 +0.9
265,694 + EX31_RS10265 0.41 +2.9
265,695 - EX31_RS10265 0.42 -0.3
265,695 - EX31_RS10265 0.42 -1.7
265,695 - EX31_RS10265 0.42 -0.4
265,747 - EX31_RS10265 0.45 -0.0
265,754 - EX31_RS10265 0.45 +0.6
265,814 - EX31_RS10265 0.49 +0.9
265,958 + EX31_RS10265 0.57 -0.1
265,958 + EX31_RS10265 0.57 -2.3
265,976 + EX31_RS10265 0.58 -1.3
266,006 + EX31_RS10265 0.60 -0.1

Or see this region's nucleotide sequence