Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09755 and EX31_RS09760 are separated by 101 nucleotides EX31_RS09760 and EX31_RS09765 are separated by 381 nucleotides
EX31_RS09755: EX31_RS09755 - xylose ABC transporter ATP-binding protein, at 155,200 to 156,705
_RS09755
EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799
_RS09760
EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500
_RS09765
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 155.905 kb on - strand, within EX31_RS09755 at 155.947 kb on + strand, within EX31_RS09755 at 155.948 kb on - strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.139 kb on - strand, within EX31_RS09755 at 156.325 kb on - strand, within EX31_RS09755 at 156.597 kb on + strand at 156.654 kb on + strand at 156.657 kb on + strand at 156.658 kb on - strand at 156.658 kb on - strand at 156.658 kb on - strand at 156.892 kb on + strand at 156.893 kb on - strand at 157.041 kb on - strand, within EX31_RS09760 at 157.120 kb on - strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.466 kb on - strand, within EX31_RS09760 at 157.531 kb on + strand, within EX31_RS09760 at 157.571 kb on + strand, within EX31_RS09760 at 157.814 kb on + strand at 157.814 kb on + strand at 157.816 kb on + strand at 157.822 kb on + strand at 157.823 kb on - strand at 157.823 kb on - strand at 157.826 kb on + strand at 157.827 kb on - strand at 157.850 kb on + strand at 157.959 kb on + strand at 157.960 kb on - strand at 157.970 kb on + strand at 157.971 kb on - strand at 157.971 kb on - strand at 158.043 kb on + strand at 158.070 kb on + strand at 158.070 kb on + strand at 158.131 kb on + strand at 158.238 kb on - strand at 158.259 kb on + strand at 158.259 kb on + strand at 158.260 kb on - strand at 158.260 kb on - strand at 158.260 kb on - strand at 158.423 kb on + strand, within EX31_RS09765 at 158.469 kb on + strand, within EX31_RS09765 at 158.470 kb on - strand, within EX31_RS09765 at 158.473 kb on - strand, within EX31_RS09765 at 158.473 kb on - strand, within EX31_RS09765 at 158.523 kb on + strand, within EX31_RS09765 at 158.531 kb on + strand, within EX31_RS09765 at 158.555 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.601 kb on - strand, within EX31_RS09765 at 158.654 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.733 kb on + strand, within EX31_RS09765 at 158.778 kb on - strand, within EX31_RS09765 at 158.778 kb on - strand, within EX31_RS09765
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 155,905 - EX31_RS09755 0.47 +0.9 155,947 + EX31_RS09755 0.50 -1.9 155,948 - EX31_RS09755 0.50 -0.1 155,950 + EX31_RS09755 0.50 -0.1 155,950 + EX31_RS09755 0.50 +0.1 155,950 + EX31_RS09755 0.50 -1.1 155,951 - EX31_RS09755 0.50 -1.1 155,951 - EX31_RS09755 0.50 +0.2 156,135 - EX31_RS09755 0.62 -0.7 156,135 - EX31_RS09755 0.62 -1.1 156,135 - EX31_RS09755 0.62 -0.7 156,139 - EX31_RS09755 0.62 +0.5 156,325 - EX31_RS09755 0.75 -0.9 156,597 + +0.9 156,654 + -0.3 156,657 + +0.9 156,658 - +0.9 156,658 - -1.1 156,658 - -2.1 156,892 + +0.7 156,893 - +0.9 157,041 - EX31_RS09760 0.24 +0.7 157,120 - EX31_RS09760 0.32 +1.3 157,354 + EX31_RS09760 0.55 +0.3 157,354 + EX31_RS09760 0.55 +0.3 157,354 + EX31_RS09760 0.55 +2.2 157,430 - EX31_RS09760 0.63 -0.4 157,430 - EX31_RS09760 0.63 +0.9 157,466 - EX31_RS09760 0.66 -1.1 157,531 + EX31_RS09760 0.73 +0.5 157,571 + EX31_RS09760 0.77 +1.5 157,814 + -0.7 157,814 + -0.7 157,816 + +1.7 157,822 + +2.5 157,823 - -0.1 157,823 - +0.1 157,826 + -1.1 157,827 - +0.9 157,850 + +0.5 157,959 + -1.5 157,960 - +1.3 157,970 + -0.5 157,971 - +0.9 157,971 - +0.9 158,043 + -0.7 158,070 + +0.1 158,070 + -1.5 158,131 + -0.5 158,238 - -1.0 158,259 + -0.1 158,259 + -1.1 158,260 - -3.3 158,260 - -0.7 158,260 - +3.2 158,423 + EX31_RS09765 0.18 +2.2 158,469 + EX31_RS09765 0.22 +0.6 158,470 - EX31_RS09765 0.22 -0.2 158,473 - EX31_RS09765 0.22 +0.9 158,473 - EX31_RS09765 0.22 +0.9 158,523 + EX31_RS09765 0.26 -0.1 158,531 + EX31_RS09765 0.27 +2.5 158,555 - EX31_RS09765 0.28 +0.9 158,601 - EX31_RS09765 0.32 -0.1 158,601 - EX31_RS09765 0.32 +1.5 158,601 - EX31_RS09765 0.32 -1.7 158,654 + EX31_RS09765 0.36 -0.5 158,733 + EX31_RS09765 0.42 +0.9 158,733 + EX31_RS09765 0.42 -0.0 158,733 + EX31_RS09765 0.42 +0.5 158,778 - EX31_RS09765 0.45 -0.1 158,778 - EX31_RS09765 0.45 -1.5
Or see this region's nucleotide sequence