Strain Fitness in Rahnella sp. WP5 around EX31_RS09760

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09755 and EX31_RS09760 are separated by 101 nucleotidesEX31_RS09760 and EX31_RS09765 are separated by 381 nucleotides EX31_RS09755: EX31_RS09755 - xylose ABC transporter ATP-binding protein, at 155,200 to 156,705 _RS09755 EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799 _RS09760 EX31_RS09765: EX31_RS09765 - xylose isomerase, at 158,181 to 159,500 _RS09765 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 155.905 kb on - strand, within EX31_RS09755at 155.947 kb on + strand, within EX31_RS09755at 155.948 kb on - strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.950 kb on + strand, within EX31_RS09755at 155.951 kb on - strand, within EX31_RS09755at 155.951 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.135 kb on - strand, within EX31_RS09755at 156.139 kb on - strand, within EX31_RS09755at 156.325 kb on - strand, within EX31_RS09755at 156.597 kb on + strandat 156.654 kb on + strandat 156.657 kb on + strandat 156.658 kb on - strandat 156.658 kb on - strandat 156.658 kb on - strandat 156.892 kb on + strandat 156.893 kb on - strandat 157.041 kb on - strand, within EX31_RS09760at 157.120 kb on - strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.354 kb on + strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.430 kb on - strand, within EX31_RS09760at 157.466 kb on - strand, within EX31_RS09760at 157.531 kb on + strand, within EX31_RS09760at 157.571 kb on + strand, within EX31_RS09760at 157.814 kb on + strandat 157.814 kb on + strandat 157.816 kb on + strandat 157.822 kb on + strandat 157.823 kb on - strandat 157.823 kb on - strandat 157.826 kb on + strandat 157.827 kb on - strandat 157.850 kb on + strandat 157.959 kb on + strandat 157.960 kb on - strandat 157.970 kb on + strandat 157.971 kb on - strandat 157.971 kb on - strandat 158.043 kb on + strandat 158.070 kb on + strandat 158.070 kb on + strandat 158.131 kb on + strandat 158.238 kb on - strandat 158.259 kb on + strandat 158.259 kb on + strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.260 kb on - strandat 158.423 kb on + strand, within EX31_RS09765at 158.469 kb on + strand, within EX31_RS09765at 158.470 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.473 kb on - strand, within EX31_RS09765at 158.523 kb on + strand, within EX31_RS09765at 158.531 kb on + strand, within EX31_RS09765at 158.555 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.601 kb on - strand, within EX31_RS09765at 158.654 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.733 kb on + strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765at 158.778 kb on - strand, within EX31_RS09765

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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155,905 - EX31_RS09755 0.47 +0.9
155,947 + EX31_RS09755 0.50 -1.9
155,948 - EX31_RS09755 0.50 -0.1
155,950 + EX31_RS09755 0.50 -0.1
155,950 + EX31_RS09755 0.50 +0.1
155,950 + EX31_RS09755 0.50 -1.1
155,951 - EX31_RS09755 0.50 -1.1
155,951 - EX31_RS09755 0.50 +0.2
156,135 - EX31_RS09755 0.62 -0.7
156,135 - EX31_RS09755 0.62 -1.1
156,135 - EX31_RS09755 0.62 -0.7
156,139 - EX31_RS09755 0.62 +0.5
156,325 - EX31_RS09755 0.75 -0.9
156,597 + +0.9
156,654 + -0.3
156,657 + +0.9
156,658 - +0.9
156,658 - -1.1
156,658 - -2.1
156,892 + +0.7
156,893 - +0.9
157,041 - EX31_RS09760 0.24 +0.7
157,120 - EX31_RS09760 0.32 +1.3
157,354 + EX31_RS09760 0.55 +0.3
157,354 + EX31_RS09760 0.55 +0.3
157,354 + EX31_RS09760 0.55 +2.2
157,430 - EX31_RS09760 0.63 -0.4
157,430 - EX31_RS09760 0.63 +0.9
157,466 - EX31_RS09760 0.66 -1.1
157,531 + EX31_RS09760 0.73 +0.5
157,571 + EX31_RS09760 0.77 +1.5
157,814 + -0.7
157,814 + -0.7
157,816 + +1.7
157,822 + +2.5
157,823 - -0.1
157,823 - +0.1
157,826 + -1.1
157,827 - +0.9
157,850 + +0.5
157,959 + -1.5
157,960 - +1.3
157,970 + -0.5
157,971 - +0.9
157,971 - +0.9
158,043 + -0.7
158,070 + +0.1
158,070 + -1.5
158,131 + -0.5
158,238 - -1.0
158,259 + -0.1
158,259 + -1.1
158,260 - -3.3
158,260 - -0.7
158,260 - +3.2
158,423 + EX31_RS09765 0.18 +2.2
158,469 + EX31_RS09765 0.22 +0.6
158,470 - EX31_RS09765 0.22 -0.2
158,473 - EX31_RS09765 0.22 +0.9
158,473 - EX31_RS09765 0.22 +0.9
158,523 + EX31_RS09765 0.26 -0.1
158,531 + EX31_RS09765 0.27 +2.5
158,555 - EX31_RS09765 0.28 +0.9
158,601 - EX31_RS09765 0.32 -0.1
158,601 - EX31_RS09765 0.32 +1.5
158,601 - EX31_RS09765 0.32 -1.7
158,654 + EX31_RS09765 0.36 -0.5
158,733 + EX31_RS09765 0.42 +0.9
158,733 + EX31_RS09765 0.42 -0.0
158,733 + EX31_RS09765 0.42 +0.5
158,778 - EX31_RS09765 0.45 -0.1
158,778 - EX31_RS09765 0.45 -1.5

Or see this region's nucleotide sequence