Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06500 and EX31_RS06505 are separated by 338 nucleotides EX31_RS06505 and EX31_RS06510 are separated by 419 nucleotides
EX31_RS06500: EX31_RS06500 - serine protease, at 73,183 to 74,064
_RS06500
EX31_RS06505: EX31_RS06505 - acid resistance repetitive basic protein Asr, at 74,403 to 74,771
_RS06505
EX31_RS06510: EX31_RS06510 - carboxypeptidase M32, at 75,191 to 76,672
_RS06510
Position (kb) 74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 73.457 kb on + strand, within EX31_RS06500 at 73.457 kb on + strand, within EX31_RS06500 at 73.458 kb on - strand, within EX31_RS06500 at 73.458 kb on - strand, within EX31_RS06500 at 73.458 kb on - strand, within EX31_RS06500 at 73.458 kb on - strand, within EX31_RS06500 at 73.458 kb on - strand, within EX31_RS06500 at 73.702 kb on + strand, within EX31_RS06500 at 73.769 kb on - strand, within EX31_RS06500 at 73.822 kb on - strand, within EX31_RS06500 at 74.005 kb on + strand at 74.005 kb on + strand at 74.005 kb on + strand at 74.005 kb on + strand at 74.120 kb on + strand at 74.147 kb on - strand at 74.148 kb on + strand at 74.148 kb on + strand at 74.148 kb on + strand at 74.148 kb on + strand at 74.149 kb on - strand at 74.149 kb on - strand at 74.149 kb on - strand at 74.211 kb on + strand at 74.295 kb on + strand at 74.296 kb on - strand at 74.345 kb on - strand at 74.362 kb on - strand at 74.372 kb on - strand at 74.372 kb on - strand at 74.375 kb on + strand at 74.375 kb on + strand at 74.375 kb on + strand at 74.375 kb on + strand at 74.401 kb on - strand at 74.401 kb on - strand at 74.401 kb on - strand at 74.404 kb on + strand at 74.404 kb on + strand at 74.404 kb on + strand at 74.404 kb on + strand at 74.404 kb on + strand at 74.405 kb on - strand at 74.405 kb on - strand at 74.405 kb on - strand at 74.405 kb on - strand at 74.487 kb on + strand, within EX31_RS06505 at 74.488 kb on - strand, within EX31_RS06505 at 74.504 kb on + strand, within EX31_RS06505 at 74.505 kb on - strand, within EX31_RS06505 at 74.505 kb on - strand, within EX31_RS06505 at 74.505 kb on - strand, within EX31_RS06505 at 74.548 kb on - strand, within EX31_RS06505 at 74.564 kb on + strand, within EX31_RS06505 at 74.607 kb on + strand, within EX31_RS06505 at 74.666 kb on + strand, within EX31_RS06505 at 74.699 kb on + strand, within EX31_RS06505 at 74.757 kb on + strand at 74.757 kb on + strand at 74.757 kb on + strand at 74.760 kb on + strand at 74.796 kb on + strand at 74.796 kb on + strand at 74.832 kb on + strand at 74.832 kb on + strand at 74.835 kb on + strand at 74.835 kb on + strand at 74.836 kb on - strand at 74.836 kb on - strand at 74.836 kb on - strand at 74.836 kb on - strand at 74.891 kb on + strand at 74.892 kb on - strand at 74.892 kb on - strand at 74.892 kb on - strand at 74.945 kb on + strand at 74.945 kb on + strand at 74.946 kb on - strand at 75.192 kb on + strand at 75.193 kb on - strand at 75.199 kb on - strand at 75.301 kb on + strand at 75.301 kb on + strand at 75.406 kb on - strand, within EX31_RS06510 at 75.421 kb on + strand, within EX31_RS06510 at 75.421 kb on + strand, within EX31_RS06510 at 75.421 kb on + strand, within EX31_RS06510 at 75.422 kb on - strand, within EX31_RS06510 at 75.422 kb on - strand, within EX31_RS06510 at 75.422 kb on - strand, within EX31_RS06510 at 75.422 kb on - strand, within EX31_RS06510 at 75.422 kb on - strand, within EX31_RS06510 at 75.423 kb on + strand, within EX31_RS06510 at 75.423 kb on + strand, within EX31_RS06510 at 75.423 kb on + strand, within EX31_RS06510 at 75.423 kb on + strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.424 kb on - strand, within EX31_RS06510 at 75.513 kb on + strand, within EX31_RS06510 at 75.514 kb on - strand, within EX31_RS06510 at 75.514 kb on - strand, within EX31_RS06510 at 75.548 kb on - strand, within EX31_RS06510
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 73,457 + EX31_RS06500 0.31 +0.6 73,457 + EX31_RS06500 0.31 +0.1 73,458 - EX31_RS06500 0.31 +0.1 73,458 - EX31_RS06500 0.31 -2.5 73,458 - EX31_RS06500 0.31 +0.3 73,458 - EX31_RS06500 0.31 -1.7 73,458 - EX31_RS06500 0.31 +0.6 73,702 + EX31_RS06500 0.59 +1.0 73,769 - EX31_RS06500 0.66 -1.3 73,822 - EX31_RS06500 0.72 +0.2 74,005 + +0.4 74,005 + +0.8 74,005 + -1.5 74,005 + -0.2 74,120 + -0.6 74,147 - -0.7 74,148 + +0.8 74,148 + +0.1 74,148 + +1.0 74,148 + +0.0 74,149 - +1.7 74,149 - +1.4 74,149 - -0.7 74,211 + -0.7 74,295 + +0.6 74,296 - -1.5 74,345 - -2.7 74,362 - -2.0 74,372 - -0.1 74,372 - +0.8 74,375 + +1.2 74,375 + +3.4 74,375 + +0.1 74,375 + -0.7 74,401 - +0.1 74,401 - +1.1 74,401 - +0.3 74,404 + -1.2 74,404 + +1.4 74,404 + -1.5 74,404 + -0.2 74,404 + -0.2 74,405 - +0.3 74,405 - -2.6 74,405 - -0.9 74,405 - -0.7 74,487 + EX31_RS06505 0.23 -0.7 74,488 - EX31_RS06505 0.23 +0.1 74,504 + EX31_RS06505 0.27 +0.8 74,505 - EX31_RS06505 0.28 +3.4 74,505 - EX31_RS06505 0.28 +2.8 74,505 - EX31_RS06505 0.28 +2.8 74,548 - EX31_RS06505 0.39 -2.7 74,564 + EX31_RS06505 0.44 +0.6 74,607 + EX31_RS06505 0.55 +0.8 74,666 + EX31_RS06505 0.71 +0.7 74,699 + EX31_RS06505 0.80 -0.7 74,757 + -0.5 74,757 + +3.4 74,757 + +0.8 74,760 + +0.3 74,796 + +0.8 74,796 + -1.2 74,832 + +0.8 74,832 + +1.8 74,835 + -2.6 74,835 + +0.4 74,836 - -0.3 74,836 - -1.5 74,836 - -0.2 74,836 - +0.1 74,891 + +0.3 74,892 - -0.7 74,892 - +0.5 74,892 - +1.8 74,945 + +0.1 74,945 + +2.4 74,946 - -0.4 75,192 + -1.2 75,193 - +0.8 75,199 - +0.3 75,301 + +2.0 75,301 + +0.6 75,406 - EX31_RS06510 0.15 +0.1 75,421 + EX31_RS06510 0.16 +1.5 75,421 + EX31_RS06510 0.16 +1.8 75,421 + EX31_RS06510 0.16 -0.7 75,422 - EX31_RS06510 0.16 +0.8 75,422 - EX31_RS06510 0.16 -0.2 75,422 - EX31_RS06510 0.16 +0.8 75,422 - EX31_RS06510 0.16 -1.2 75,422 - EX31_RS06510 0.16 -2.3 75,423 + EX31_RS06510 0.16 +0.8 75,423 + EX31_RS06510 0.16 +1.4 75,423 + EX31_RS06510 0.16 -0.6 75,423 + EX31_RS06510 0.16 +0.4 75,424 - EX31_RS06510 0.16 +0.3 75,424 - EX31_RS06510 0.16 -2.0 75,424 - EX31_RS06510 0.16 +1.0 75,424 - EX31_RS06510 0.16 -0.2 75,424 - EX31_RS06510 0.16 +0.2 75,424 - EX31_RS06510 0.16 +1.1 75,424 - EX31_RS06510 0.16 -0.4 75,513 + EX31_RS06510 0.22 -0.4 75,514 - EX31_RS06510 0.22 +3.4 75,514 - EX31_RS06510 0.22 -0.2 75,548 - EX31_RS06510 0.24 +0.7
Or see this region's nucleotide sequence