Strain Fitness in Rahnella sp. WP5 around EX31_RS04905

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
105,413	+		EX31_RS04895	0.69	-0.8
105,414	-		EX31_RS04895	0.69	-0.6
105,414	-		EX31_RS04895	0.69	+0.9
105,414	-		EX31_RS04895	0.69	+0.2
105,414	-		EX31_RS04895	0.69	+1.0
105,414	-		EX31_RS04895	0.69	-0.4
105,414	-		EX31_RS04895	0.69	+1.5
105,424	+		EX31_RS04895	0.72	-0.7
105,424	+		EX31_RS04895	0.72	+1.2
105,425	-		EX31_RS04895	0.73	-0.5
105,425	-		EX31_RS04895	0.73	+0.5
105,425	-		EX31_RS04895	0.73	-0.7
105,439	+		EX31_RS04895	0.77	+0.6
105,439	+		EX31_RS04895	0.77	+0.1
105,440	-		EX31_RS04895	0.78	+0.4
105,486	-				+0.5
105,489	+				-0.5
105,489	+				+0.5
105,489	+				+0.7
105,489	+				-0.8
105,508	-				+0.9
105,508	-				-1.2
105,520	+				+1.8
105,520	+				+1.6
105,521	-				-1.6
105,529	+				+0.1
105,529	+				+0.6
105,529	+				+0.3
105,529	+				+0.5
105,529	+				-1.2
105,529	+				+0.8
105,529	+				-0.1
105,529	+				-0.1
105,529	+				+0.8
105,530	-				-1.0
105,530	-				+0.8
105,530	-				+0.0
105,530	-				-0.7
105,530	-				+0.5
105,530	-				+0.4
105,530	-				+1.8
105,533	+				-0.1
105,533	+				+0.4
105,533	+				+0.2
105,534	-				+1.8
105,534	-				+0.9
105,534	-				+0.2
105,590	+				+1.1
105,591	-				-0.6
105,591	-				-0.2
105,788	+		EX31_RS04900	0.28	+1.2
105,788	+		EX31_RS04900	0.28	+0.1
105,788	+		EX31_RS04900	0.28	+0.0
105,789	-		EX31_RS04900	0.28	+0.3
105,915	+		EX31_RS04900	0.43	-0.2
105,941	-		EX31_RS04900	0.46	+0.8
106,003	+		EX31_RS04900	0.53	+0.2
106,003	+		EX31_RS04900	0.53	-0.6
106,003	+		EX31_RS04900	0.53	+0.7
106,004	-		EX31_RS04900	0.53	-0.8
106,004	-		EX31_RS04900	0.53	-0.2
106,069	+		EX31_RS04900	0.61	+0.7
106,069	+		EX31_RS04900	0.61	-0.1
106,084	+		EX31_RS04900	0.62	+1.8
106,085	-		EX31_RS04900	0.63	+1.1
106,134	-		EX31_RS04900	0.68	-0.5
106,134	-		EX31_RS04900	0.68	+0.7
106,134	-		EX31_RS04900	0.68	-0.0
106,188	-		EX31_RS04900	0.75	+0.0
106,200	+		EX31_RS04900	0.76	+1.5
106,200	+		EX31_RS04900	0.76	-0.4
106,200	+		EX31_RS04900	0.76	+1.1
106,200	+		EX31_RS04900	0.76	-0.2
106,201	-		EX31_RS04900	0.76	+1.2
106,201	-		EX31_RS04900	0.76	+1.0
106,201	-		EX31_RS04900	0.76	+0.5
106,201	-		EX31_RS04900	0.76	-0.7
106,201	-		EX31_RS04900	0.76	+0.0
106,201	-		EX31_RS04900	0.76	-0.5
106,244	+		EX31_RS04900	0.81	+0.7
106,244	+		EX31_RS04900	0.81	+0.4
106,244	+		EX31_RS04900	0.81	+0.8
106,245	-		EX31_RS04900	0.81	-0.2
106,245	-		EX31_RS04900	0.81	+0.0
106,250	+		EX31_RS04900	0.82	+1.1
106,250	+		EX31_RS04900	0.82	-0.2
106,250	+		EX31_RS04900	0.82	+1.0
106,250	+		EX31_RS04900	0.82	+1.0
106,250	+		EX31_RS04900	0.82	-1.0
106,250	+		EX31_RS04900	0.82	+1.6
106,250	+		EX31_RS04900	0.82	+0.3
106,250	+		EX31_RS04900	0.82	+1.3
106,250	+		EX31_RS04900	0.82	+0.5
106,250	+		EX31_RS04900	0.82	+0.7
106,251	-		EX31_RS04900	0.82	-0.5
106,284	-		EX31_RS04900	0.86	-0.4
106,405	+				-0.6
106,405	+				-0.2
106,406	-				-0.5
106,406	-				-0.7
106,406	-				-0.4
106,406	-				-3.0
106,441	-				-0.2
106,442	+				+0.0
106,442	+				-0.6
106,442	+				-0.2
106,442	+				+0.8
106,442	+				+0.7
106,442	+				+0.2
106,442	+				+0.7
106,442	+				+0.4
106,442	+				+0.4
106,443	-				+0.5
106,443	-				+0.3
106,443	-				+0.5
106,443	-				-0.4
106,443	-				+0.6
106,443	-				-0.2
106,443	-				+0.6
106,443	-				+0.4
106,443	-				-2.0
106,443	-				+0.6
106,527	+				+1.2
106,528	-				-0.0
106,667	+		EX31_RS04905	0.15	+3.7
106,675	-		EX31_RS04905	0.16	-2.2
106,675	-		EX31_RS04905	0.16	+0.1
106,712	+		EX31_RS04905	0.18	+0.4
106,713	-		EX31_RS04905	0.18	-0.4
106,713	-		EX31_RS04905	0.18	-0.4
106,822	+		EX31_RS04905	0.25	-2.7
106,823	-		EX31_RS04905	0.25	+0.8
106,823	-		EX31_RS04905	0.25	+0.0
106,823	-		EX31_RS04905	0.25	+0.9
106,823	-		EX31_RS04905	0.25	+2.8
106,823	-		EX31_RS04905	0.25	-0.7
106,869	+		EX31_RS04905	0.28	-0.3
106,923	+		EX31_RS04905	0.31	+2.6
107,064	+		EX31_RS04905	0.39	-0.6
107,064	+		EX31_RS04905	0.39	-0.1
107,064	+		EX31_RS04905	0.39	-0.2
107,064	+		EX31_RS04905	0.39	-0.1
107,065	-		EX31_RS04905	0.39	+0.9
107,065	-		EX31_RS04905	0.39	+0.1
107,065	-		EX31_RS04905	0.39	+0.1
107,065	-		EX31_RS04905	0.39	+1.0
107,065	-		EX31_RS04905	0.39	-0.6
107,065	-		EX31_RS04905	0.39	+0.2
107,065	-		EX31_RS04905	0.39	+0.5
107,111	+		EX31_RS04905	0.42	-0.7
107,111	+		EX31_RS04905	0.42	-0.0
107,111	+		EX31_RS04905	0.42	-0.6
107,111	+		EX31_RS04905	0.42	-3.1
107,112	-		EX31_RS04905	0.42	-1.0
107,112	-		EX31_RS04905	0.42	-1.1
107,112	-		EX31_RS04905	0.42	-0.5
107,112	-		EX31_RS04905	0.42	-0.8
107,249	+		EX31_RS04905	0.50	+1.3
107,284	-		EX31_RS04905	0.53	-0.4
107,327	+		EX31_RS04905	0.55	-1.0
107,327	+		EX31_RS04905	0.55	-0.5
107,327	+		EX31_RS04905	0.55	-0.4
107,327	+		EX31_RS04905	0.55	+0.4
107,327	+		EX31_RS04905	0.55	+1.4
107,328	-		EX31_RS04905	0.55	+1.2
107,328	-		EX31_RS04905	0.55	-0.1
107,328	-		EX31_RS04905	0.55	-0.2
107,328	-		EX31_RS04905	0.55	+0.7
107,328	-		EX31_RS04905	0.55	+0.0
107,331	+		EX31_RS04905	0.55	+0.8
107,331	+		EX31_RS04905	0.55	+0.2
107,331	+		EX31_RS04905	0.55	+1.1
107,332	-		EX31_RS04905	0.55	+2.1
107,332	-		EX31_RS04905	0.55	+0.0
107,332	-		EX31_RS04905	0.55	-2.5
107,332	-		EX31_RS04905	0.55	+1.1
107,337	+		EX31_RS04905	0.56	+0.7
107,460	+		EX31_RS04905	0.63	-2.0
107,521	-		EX31_RS04905	0.67	+0.5
107,582	+		EX31_RS04905	0.70	+0.6
107,582	+		EX31_RS04905	0.70	+0.9
107,582	+		EX31_RS04905	0.70	-1.1
107,582	+		EX31_RS04905	0.70	-0.7
107,583	-		EX31_RS04905	0.71	+0.2
107,583	-		EX31_RS04905	0.71	-2.0
107,583	-		EX31_RS04905	0.71	-0.3
107,648	+		EX31_RS04905	0.74	+0.3
107,648	+		EX31_RS04905	0.74	-0.1
107,648	+		EX31_RS04905	0.74	+1.4
107,648	+		EX31_RS04905	0.74	+0.1
107,649	-		EX31_RS04905	0.74	+0.5
107,660	+		EX31_RS04905	0.75	+0.8
107,660	+		EX31_RS04905	0.75	-1.0
107,661	-		EX31_RS04905	0.75	+0.1
107,661	-		EX31_RS04905	0.75	+0.0
107,661	-		EX31_RS04905	0.75	-0.5
107,661	-		EX31_RS04905	0.75	+0.7
107,661	-		EX31_RS04905	0.75	+0.9
107,672	+		EX31_RS04905	0.76	-0.4
107,672	+		EX31_RS04905	0.76	+0.5
107,672	+		EX31_RS04905	0.76	-0.4
107,672	+		EX31_RS04905	0.76	+0.4
107,672	+		EX31_RS04905	0.76	-0.4
107,672	+		EX31_RS04905	0.76	-1.2
107,672	+		EX31_RS04905	0.76	-0.6
107,672	+		EX31_RS04905	0.76	-1.2
107,672	+		EX31_RS04905	0.76	-1.4
107,672	+		EX31_RS04905	0.76	-0.4
107,672	+		EX31_RS04905	0.76	-0.0
107,672	+		EX31_RS04905	0.76	+0.6
107,672	+		EX31_RS04905	0.76	-0.4
107,673	-		EX31_RS04905	0.76	+1.1
107,673	-		EX31_RS04905	0.76	-0.0
107,673	-		EX31_RS04905	0.76	-0.3
107,673	-		EX31_RS04905	0.76	-0.0
107,673	-		EX31_RS04905	0.76	+0.9
107,673	-		EX31_RS04905	0.76	-0.5
107,673	-		EX31_RS04905	0.76	+1.3
107,673	-		EX31_RS04905	0.76	-0.7
107,673	-		EX31_RS04905	0.76	+0.7
107,673	-		EX31_RS04905	0.76	+1.5
107,673	-		EX31_RS04905	0.76	+0.3
107,673	-		EX31_RS04905	0.76	+0.5
107,673	-		EX31_RS04905	0.76	+0.5
107,673	-		EX31_RS04905	0.76	+0.5
107,673	-		EX31_RS04905	0.76	-0.2
107,673	-		EX31_RS04905	0.76	+0.6
107,673	-		EX31_RS04905	0.76	+1.0
107,673	-		EX31_RS04905	0.76	-1.5
107,673	-		EX31_RS04905	0.76	+0.7
107,673	-		EX31_RS04905	0.76	+0.2
107,673	-		EX31_RS04905	0.76	+0.7
107,673	-		EX31_RS04905	0.76	+0.7
107,673	-		EX31_RS04905	0.76	+2.1
107,673	-		EX31_RS04905	0.76	-0.4
107,673	-		EX31_RS04905	0.76	-1.3
107,673	-		EX31_RS04905	0.76	+1.1
107,826	+		EX31_RS04905	0.85	-1.3
107,826	+		EX31_RS04905	0.85	+0.4
107,826	+		EX31_RS04905	0.85	+0.5
107,826	+		EX31_RS04905	0.85	+1.0
107,826	+		EX31_RS04905	0.85	+0.7
107,826	+		EX31_RS04905	0.85	+0.6
107,826	+		EX31_RS04905	0.85	-0.3
107,826	+		EX31_RS04905	0.85	-0.1
107,826	+		EX31_RS04905	0.85	+0.4
107,826	+		EX31_RS04905	0.85	+2.1
107,826	+		EX31_RS04905	0.85	+0.1
107,826	+		EX31_RS04905	0.85	-0.2
107,827	-		EX31_RS04905	0.85	+0.8
107,827	-		EX31_RS04905	0.85	+0.8
107,827	-		EX31_RS04905	0.85	+1.2
107,827	-		EX31_RS04905	0.85	-0.5
107,827	-		EX31_RS04905	0.85	+1.5
107,827	-		EX31_RS04905	0.85	+0.4
107,827	-		EX31_RS04905	0.85	+0.5
107,827	-		EX31_RS04905	0.85	-0.3
107,827	-		EX31_RS04905	0.85	-1.0
107,827	-		EX31_RS04905	0.85	-0.1
107,827	-		EX31_RS04905	0.85	+0.7
107,827	-		EX31_RS04905	0.85	-1.2
107,827	-		EX31_RS04905	0.85	-0.8
107,830	+		EX31_RS04905	0.85	+0.2
107,830	+		EX31_RS04905	0.85	+1.2
107,830	+		EX31_RS04905	0.85	+0.5
107,830	+		EX31_RS04905	0.85	-0.3
107,830	+		EX31_RS04905	0.85	+0.6
107,830	+		EX31_RS04905	0.85	-2.2
107,830	+		EX31_RS04905	0.85	-0.5
107,830	+		EX31_RS04905	0.85	+1.0
107,830	+		EX31_RS04905	0.85	-1.8
107,830	+		EX31_RS04905	0.85	-0.5
107,830	+		EX31_RS04905	0.85	-0.4
107,830	+		EX31_RS04905	0.85	-0.0
107,830	+		EX31_RS04905	0.85	-0.4
107,831	-		EX31_RS04905	0.85	-0.1
107,831	-		EX31_RS04905	0.85	-1.4
107,831	-		EX31_RS04905	0.85	-0.9
107,831	-		EX31_RS04905	0.85	-0.1
107,831	-		EX31_RS04905	0.85	-0.8
107,831	-		EX31_RS04905	0.85	-0.1
107,831	-		EX31_RS04905	0.85	+1.1
107,831	-		EX31_RS04905	0.85	-0.8
107,831	-		EX31_RS04905	0.85	-1.2
107,831	-		EX31_RS04905	0.85	+1.8
107,902	-		EX31_RS04905	0.90	+0.2
107,956	-				+0.2
107,961	+				+0.3
107,962	-				+0.2
107,962	-				-0.7
107,962	-				-0.2
107,971	+				+0.6
107,980	-				+0.3
108,009	+				-1.3
108,189	+				+1.2
108,190	-				-1.4
108,210	-				+0.2
108,222	-				-0.9
108,222	-				+0.7
108,265	+				-0.4
108,266	-				+0.3
108,266	-				-0.6
108,382	-				-0.2
108,441	+		EX31_RS04910	0.23	+0.4
108,441	+		EX31_RS04910	0.23	-0.1
108,441	+		EX31_RS04910	0.23	-0.9
108,441	+		EX31_RS04910	0.23	+1.0
108,441	+		EX31_RS04910	0.23	-0.1
108,441	+		EX31_RS04910	0.23	+0.7
108,441	+		EX31_RS04910	0.23	+1.5
108,441	+		EX31_RS04910	0.23	-0.7
108,441	+		EX31_RS04910	0.23	+1.6
108,441	+		EX31_RS04910	0.23	-0.1
108,441	+		EX31_RS04910	0.23	-0.5
108,441	+		EX31_RS04910	0.23	-1.1
108,441	+		EX31_RS04910	0.23	+1.0
108,441	+		EX31_RS04910	0.23	+0.5
108,441	+		EX31_RS04910	0.23	-0.1
108,441	+		EX31_RS04910	0.23	-0.2
108,442	-		EX31_RS04910	0.23	+1.3
108,442	-		EX31_RS04910	0.23	+1.8
108,442	-		EX31_RS04910	0.23	+1.8
108,442	-		EX31_RS04910	0.23	+1.4
108,442	-		EX31_RS04910	0.23	-2.1
108,442	-		EX31_RS04910	0.23	-0.2
108,442	-		EX31_RS04910	0.23	-1.5
108,442	-		EX31_RS04910	0.23	-0.3
108,442	-		EX31_RS04910	0.23	+1.2
108,442	-		EX31_RS04910	0.23	-0.2
108,444	+		EX31_RS04910	0.24	+0.6
108,444	+		EX31_RS04910	0.24	-0.1
108,444	+		EX31_RS04910	0.24	-0.8
108,444	+		EX31_RS04910	0.24	-0.0
108,444	+		EX31_RS04910	0.24	+0.6
108,444	+		EX31_RS04910	0.24	-1.5
108,444	+		EX31_RS04910	0.24	-0.7
108,444	+		EX31_RS04910	0.24	-1.0
108,444	+		EX31_RS04910	0.24	+0.4
108,444	+		EX31_RS04910	0.24	+0.4
108,445	-		EX31_RS04910	0.24	+1.2
108,445	-		EX31_RS04910	0.24	+0.2
108,445	-		EX31_RS04910	0.24	+1.4
108,445	-		EX31_RS04910	0.24	-0.0
108,445	-		EX31_RS04910	0.24	+0.7
108,445	-		EX31_RS04910	0.24	-0.3
108,445	-		EX31_RS04910	0.24	-2.5
108,445	-		EX31_RS04910	0.24	+1.0
108,445	-		EX31_RS04910	0.24	-1.4
108,445	-		EX31_RS04910	0.24	-1.5
108,445	-		EX31_RS04910	0.24	+0.5
108,445	-		EX31_RS04910	0.24	+0.2
108,507	+		EX31_RS04910	0.47	-1.2
108,507	+		EX31_RS04910	0.47	+1.0
108,507	+		EX31_RS04910	0.47	+2.4
108,507	+		EX31_RS04910	0.47	-0.7
108,507	+		EX31_RS04910	0.47	-0.3
108,507	+		EX31_RS04910	0.47	+1.3
108,507	+		EX31_RS04910	0.47	+0.3
108,508	-		EX31_RS04910	0.47	-0.7
108,508	-		EX31_RS04910	0.47	+0.6
108,508	-		EX31_RS04910	0.47	+1.1
108,508	-		EX31_RS04910	0.47	-0.4
108,508	-		EX31_RS04910	0.47	+0.9
108,508	-		EX31_RS04910	0.47	-0.8
108,508	-		EX31_RS04910	0.47	+0.6
108,508	-		EX31_RS04910	0.47	+0.7
108,543	+		EX31_RS04910	0.60	-0.4
108,543	+		EX31_RS04910	0.60	+0.8
108,544	-		EX31_RS04910	0.61	+0.5
108,551	-		EX31_RS04910	0.63	+0.4
108,551	-		EX31_RS04910	0.63	+0.1
108,606	-		EX31_RS04910	0.84	+0.8
108,631	+				+1.0
108,632	-				-0.1
108,654	+				-3.1
108,654	+				+0.9
108,654	+				+1.3
108,654	+				+0.8
108,654	+				-0.2
108,655	-				-0.2
108,655	-				-0.8
108,655	-				+0.4
108,655	-				+0.0
108,674	+				-0.2
108,674	+				+1.8
108,675	-				+1.0
108,742	-				-0.3
108,783	-				+0.1
108,790	+				-1.9
108,790	+				+2.0
108,790	+				-0.4
108,790	+				-0.0
108,790	+				-0.1
108,790	+				-0.7
108,790	+				+1.8
108,790	+				+0.6
108,791	-				+0.9
108,791	-				+1.4
108,791	-				+1.1
108,822	+				-0.3
108,823	-				+0.7
108,823	-				-0.7
108,823	-				-1.2
108,823	-				+0.4
108,823	-				+2.2
108,826	+				-1.1
108,826	+				-1.1
108,826	+				+0.7
108,826	+				-2.0
108,826	+				-0.3
108,826	+				-0.7
108,826	+				-1.8
108,826	+				-2.1
108,827	-				+0.8
108,827	-				-0.6
108,827	-				+1.8
108,827	-				+1.0
108,827	-				+0.2
108,827	-				+1.4
108,827	-				+0.9
108,827	-				+1.3
108,827	-				-0.6
108,829	+				+0.3
108,829	+				+1.0
108,846	+				+0.7
108,847	-				-0.0
108,871	+				-0.5
108,872	-				-0.3
109,045	+		EX31_RS04915	0.22	-0.9
109,046	-		EX31_RS04915	0.22	+0.1
109,046	-		EX31_RS04915	0.22	+0.6
109,049	+		EX31_RS04915	0.23	+0.7