Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04870 and EX31_RS04875 are separated by 27 nucleotides EX31_RS04875 and EX31_RS04880 are separated by 17 nucleotides
EX31_RS04870: EX31_RS04870 - malonate decarboxylase subunit epsilon, at 100,801 to 101,736
_RS04870
EX31_RS04875: EX31_RS04875 - malonate decarboxylase holo-ACP synthase, at 101,764 to 102,390
_RS04875
EX31_RS04880: EX31_RS04880 - AEC family transporter, at 102,408 to 103,370
_RS04880
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 100.767 kb on - strand at 100.767 kb on - strand at 100.767 kb on - strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.787 kb on + strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.788 kb on - strand at 100.948 kb on + strand, within EX31_RS04870 at 100.948 kb on + strand, within EX31_RS04870 at 100.948 kb on + strand, within EX31_RS04870 at 100.948 kb on + strand, within EX31_RS04870 at 100.948 kb on + strand, within EX31_RS04870 at 100.948 kb on + strand, within EX31_RS04870 at 100.949 kb on - strand, within EX31_RS04870 at 100.949 kb on - strand, within EX31_RS04870 at 100.949 kb on - strand, within EX31_RS04870 at 100.995 kb on + strand, within EX31_RS04870 at 100.995 kb on + strand, within EX31_RS04870 at 100.996 kb on - strand, within EX31_RS04870 at 101.045 kb on + strand, within EX31_RS04870 at 101.073 kb on - strand, within EX31_RS04870 at 101.073 kb on - strand, within EX31_RS04870 at 101.094 kb on + strand, within EX31_RS04870 at 101.094 kb on + strand, within EX31_RS04870 at 101.095 kb on - strand, within EX31_RS04870 at 101.095 kb on - strand, within EX31_RS04870 at 101.106 kb on + strand, within EX31_RS04870 at 101.251 kb on + strand, within EX31_RS04870 at 101.252 kb on - strand, within EX31_RS04870 at 101.252 kb on - strand, within EX31_RS04870 at 101.252 kb on - strand, within EX31_RS04870 at 101.274 kb on + strand, within EX31_RS04870 at 101.285 kb on + strand, within EX31_RS04870 at 101.285 kb on + strand, within EX31_RS04870 at 101.285 kb on + strand, within EX31_RS04870 at 101.285 kb on + strand, within EX31_RS04870 at 101.286 kb on - strand, within EX31_RS04870 at 101.286 kb on - strand, within EX31_RS04870 at 101.286 kb on - strand, within EX31_RS04870 at 101.286 kb on - strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.287 kb on + strand, within EX31_RS04870 at 101.288 kb on - strand, within EX31_RS04870 at 101.288 kb on - strand, within EX31_RS04870 at 101.382 kb on - strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.422 kb on + strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.423 kb on - strand, within EX31_RS04870 at 101.435 kb on + strand, within EX31_RS04870 at 101.554 kb on + strand, within EX31_RS04870 at 101.554 kb on + strand, within EX31_RS04870 at 101.555 kb on - strand, within EX31_RS04870 at 101.555 kb on - strand, within EX31_RS04870 at 101.567 kb on - strand, within EX31_RS04870 at 101.721 kb on + strand at 101.721 kb on + strand at 101.721 kb on + strand at 101.721 kb on + strand at 101.721 kb on + strand at 101.721 kb on + strand at 101.721 kb on + strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.722 kb on - strand at 101.726 kb on - strand at 101.726 kb on - strand at 101.877 kb on + strand, within EX31_RS04875 at 101.877 kb on + strand, within EX31_RS04875 at 101.878 kb on - strand, within EX31_RS04875 at 101.924 kb on + strand, within EX31_RS04875 at 101.975 kb on - strand, within EX31_RS04875 at 102.027 kb on - strand, within EX31_RS04875 at 102.077 kb on - strand, within EX31_RS04875 at 102.077 kb on - strand, within EX31_RS04875 at 102.081 kb on + strand, within EX31_RS04875 at 102.081 kb on + strand, within EX31_RS04875 at 102.082 kb on - strand, within EX31_RS04875 at 102.082 kb on - strand, within EX31_RS04875 at 102.082 kb on - strand, within EX31_RS04875 at 102.127 kb on + strand, within EX31_RS04875 at 102.127 kb on + strand, within EX31_RS04875 at 102.214 kb on - strand, within EX31_RS04875 at 102.261 kb on + strand, within EX31_RS04875 at 102.275 kb on - strand, within EX31_RS04875 at 102.308 kb on - strand, within EX31_RS04875 at 102.390 kb on + strand at 102.390 kb on + strand at 102.390 kb on + strand at 102.390 kb on + strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.391 kb on - strand at 102.404 kb on + strand at 102.404 kb on + strand at 102.404 kb on + strand at 102.405 kb on - strand at 102.405 kb on - strand at 102.434 kb on + strand at 102.435 kb on - strand at 102.435 kb on - strand at 102.455 kb on + strand at 102.456 kb on - strand at 102.456 kb on - strand at 102.463 kb on - strand at 102.463 kb on - strand at 102.674 kb on + strand, within EX31_RS04880 at 102.783 kb on - strand, within EX31_RS04880 at 102.868 kb on - strand, within EX31_RS04880 at 102.868 kb on - strand, within EX31_RS04880 at 102.969 kb on - strand, within EX31_RS04880 at 103.045 kb on + strand, within EX31_RS04880 at 103.046 kb on - strand, within EX31_RS04880 at 103.119 kb on - strand, within EX31_RS04880 at 103.123 kb on + strand, within EX31_RS04880 at 103.124 kb on - strand, within EX31_RS04880 at 103.124 kb on - strand, within EX31_RS04880 at 103.124 kb on - strand, within EX31_RS04880 at 103.124 kb on - strand, within EX31_RS04880 at 103.124 kb on - strand, within EX31_RS04880 at 103.135 kb on + strand, within EX31_RS04880 at 103.135 kb on + strand, within EX31_RS04880 at 103.135 kb on + strand, within EX31_RS04880 at 103.135 kb on + strand, within EX31_RS04880 at 103.135 kb on + strand, within EX31_RS04880 at 103.136 kb on - strand, within EX31_RS04880 at 103.136 kb on - strand, within EX31_RS04880 at 103.136 kb on - strand, within EX31_RS04880 at 103.136 kb on - strand, within EX31_RS04880 at 103.136 kb on - strand, within EX31_RS04880 at 103.209 kb on + strand, within EX31_RS04880 at 103.210 kb on - strand, within EX31_RS04880 at 103.210 kb on - strand, within EX31_RS04880 at 103.210 kb on - strand, within EX31_RS04880 at 103.210 kb on - strand, within EX31_RS04880 at 103.236 kb on + strand, within EX31_RS04880 at 103.356 kb on + strand at 103.356 kb on + strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.357 kb on - strand at 103.359 kb on + strand at 103.359 kb on + strand at 103.359 kb on + strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.360 kb on - strand at 103.363 kb on + strand at 103.363 kb on + strand at 103.363 kb on + strand at 103.364 kb on - strand at 103.364 kb on - strand at 103.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 100,767 - -0.3 100,767 - +0.2 100,767 - -1.4 100,787 + -1.0 100,787 + -1.4 100,787 + +2.5 100,787 + -1.5 100,787 + -1.7 100,787 + +0.9 100,787 + +0.0 100,787 + -0.3 100,788 - +0.4 100,788 - +0.2 100,788 - +0.2 100,788 - -0.1 100,788 - -1.0 100,788 - +1.1 100,788 - -0.2 100,788 - +2.5 100,788 - -0.8 100,948 + EX31_RS04870 0.16 -1.6 100,948 + EX31_RS04870 0.16 +1.8 100,948 + EX31_RS04870 0.16 -1.3 100,948 + EX31_RS04870 0.16 +1.1 100,948 + EX31_RS04870 0.16 +0.3 100,948 + EX31_RS04870 0.16 +0.6 100,949 - EX31_RS04870 0.16 +0.9 100,949 - EX31_RS04870 0.16 +0.4 100,949 - EX31_RS04870 0.16 +0.4 100,995 + EX31_RS04870 0.21 -0.8 100,995 + EX31_RS04870 0.21 +0.0 100,996 - EX31_RS04870 0.21 +0.2 101,045 + EX31_RS04870 0.26 +0.5 101,073 - EX31_RS04870 0.29 -0.4 101,073 - EX31_RS04870 0.29 +1.0 101,094 + EX31_RS04870 0.31 -0.9 101,094 + EX31_RS04870 0.31 -0.8 101,095 - EX31_RS04870 0.31 +0.4 101,095 - EX31_RS04870 0.31 +0.2 101,106 + EX31_RS04870 0.33 -0.9 101,251 + EX31_RS04870 0.48 -0.7 101,252 - EX31_RS04870 0.48 -0.6 101,252 - EX31_RS04870 0.48 -1.1 101,252 - EX31_RS04870 0.48 -0.6 101,274 + EX31_RS04870 0.51 +0.8 101,285 + EX31_RS04870 0.52 +1.0 101,285 + EX31_RS04870 0.52 -0.1 101,285 + EX31_RS04870 0.52 -0.2 101,285 + EX31_RS04870 0.52 +0.5 101,286 - EX31_RS04870 0.52 -0.1 101,286 - EX31_RS04870 0.52 +1.1 101,286 - EX31_RS04870 0.52 +0.7 101,286 - EX31_RS04870 0.52 +0.2 101,287 + EX31_RS04870 0.52 +0.0 101,287 + EX31_RS04870 0.52 +0.1 101,287 + EX31_RS04870 0.52 -0.6 101,287 + EX31_RS04870 0.52 +1.6 101,287 + EX31_RS04870 0.52 -0.3 101,287 + EX31_RS04870 0.52 -0.2 101,288 - EX31_RS04870 0.52 -0.2 101,288 - EX31_RS04870 0.52 +1.0 101,382 - EX31_RS04870 0.62 +0.1 101,422 + EX31_RS04870 0.66 -2.5 101,422 + EX31_RS04870 0.66 -0.3 101,422 + EX31_RS04870 0.66 -0.8 101,422 + EX31_RS04870 0.66 +0.6 101,422 + EX31_RS04870 0.66 -0.8 101,422 + EX31_RS04870 0.66 +0.4 101,422 + EX31_RS04870 0.66 +0.9 101,422 + EX31_RS04870 0.66 +1.8 101,422 + EX31_RS04870 0.66 +0.0 101,423 - EX31_RS04870 0.66 +0.2 101,423 - EX31_RS04870 0.66 +0.1 101,423 - EX31_RS04870 0.66 -2.1 101,423 - EX31_RS04870 0.66 -0.1 101,423 - EX31_RS04870 0.66 +0.8 101,423 - EX31_RS04870 0.66 +0.2 101,423 - EX31_RS04870 0.66 -0.1 101,423 - EX31_RS04870 0.66 -2.1 101,423 - EX31_RS04870 0.66 +0.1 101,435 + EX31_RS04870 0.68 +0.7 101,554 + EX31_RS04870 0.80 +0.7 101,554 + EX31_RS04870 0.80 -0.2 101,555 - EX31_RS04870 0.81 -0.3 101,555 - EX31_RS04870 0.81 +0.6 101,567 - EX31_RS04870 0.82 +0.6 101,721 + -1.0 101,721 + -2.1 101,721 + +0.8 101,721 + -2.1 101,721 + -0.7 101,721 + +0.8 101,721 + +1.1 101,722 - -1.0 101,722 - +1.2 101,722 - -0.6 101,722 - -0.0 101,722 - -0.2 101,722 - +0.5 101,722 - +1.2 101,722 - -0.2 101,722 - -2.0 101,722 - -0.4 101,722 - +0.9 101,726 - +0.8 101,726 - +0.9 101,877 + EX31_RS04875 0.18 -0.4 101,877 + EX31_RS04875 0.18 -1.1 101,878 - EX31_RS04875 0.18 +0.2 101,924 + EX31_RS04875 0.26 -0.5 101,975 - EX31_RS04875 0.34 +1.1 102,027 - EX31_RS04875 0.42 +0.8 102,077 - EX31_RS04875 0.50 +1.3 102,077 - EX31_RS04875 0.50 +1.8 102,081 + EX31_RS04875 0.51 +1.2 102,081 + EX31_RS04875 0.51 -0.1 102,082 - EX31_RS04875 0.51 +0.0 102,082 - EX31_RS04875 0.51 +0.2 102,082 - EX31_RS04875 0.51 +0.1 102,127 + EX31_RS04875 0.58 +0.9 102,127 + EX31_RS04875 0.58 +1.4 102,214 - EX31_RS04875 0.72 +0.8 102,261 + EX31_RS04875 0.79 +0.2 102,275 - EX31_RS04875 0.81 +0.2 102,308 - EX31_RS04875 0.87 -0.5 102,390 + +1.4 102,390 + +0.8 102,390 + +0.2 102,390 + +1.4 102,391 - +0.4 102,391 - +1.9 102,391 - +0.0 102,391 - -0.1 102,391 - +1.1 102,391 - +1.8 102,404 + -0.5 102,404 + +1.1 102,404 + -2.6 102,405 - +0.4 102,405 - -0.4 102,434 + +2.7 102,435 - -1.4 102,435 - +0.2 102,455 + -0.3 102,456 - -0.2 102,456 - -1.1 102,463 - +1.6 102,463 - +0.0 102,674 + EX31_RS04880 0.28 -0.0 102,783 - EX31_RS04880 0.39 -0.5 102,868 - EX31_RS04880 0.48 -0.3 102,868 - EX31_RS04880 0.48 -0.8 102,969 - EX31_RS04880 0.58 +3.1 103,045 + EX31_RS04880 0.66 +1.2 103,046 - EX31_RS04880 0.66 +1.1 103,119 - EX31_RS04880 0.74 -0.9 103,123 + EX31_RS04880 0.74 +0.8 103,124 - EX31_RS04880 0.74 +0.9 103,124 - EX31_RS04880 0.74 +0.0 103,124 - EX31_RS04880 0.74 +0.6 103,124 - EX31_RS04880 0.74 +0.2 103,124 - EX31_RS04880 0.74 -1.7 103,135 + EX31_RS04880 0.75 -0.1 103,135 + EX31_RS04880 0.75 +1.8 103,135 + EX31_RS04880 0.75 -1.6 103,135 + EX31_RS04880 0.75 +1.4 103,135 + EX31_RS04880 0.75 -0.9 103,136 - EX31_RS04880 0.76 +0.7 103,136 - EX31_RS04880 0.76 -0.1 103,136 - EX31_RS04880 0.76 -0.9 103,136 - EX31_RS04880 0.76 +1.1 103,136 - EX31_RS04880 0.76 +0.8 103,209 + EX31_RS04880 0.83 +1.4 103,210 - EX31_RS04880 0.83 +0.8 103,210 - EX31_RS04880 0.83 +0.6 103,210 - EX31_RS04880 0.83 -2.7 103,210 - EX31_RS04880 0.83 +0.6 103,236 + EX31_RS04880 0.86 +0.9 103,356 + +0.3 103,356 + -0.2 103,357 - +1.0 103,357 - -0.1 103,357 - +0.7 103,357 - +0.6 103,357 - +1.1 103,357 - +0.5 103,357 - +0.5 103,359 + +1.5 103,359 + -0.2 103,359 + +0.8 103,360 - -1.7 103,360 - +0.5 103,360 - -0.0 103,360 - -0.1 103,360 - +1.4 103,360 - +1.3 103,360 - -1.4 103,360 - +0.8 103,360 - +0.6 103,360 - +1.8 103,360 - -0.6 103,360 - -1.0 103,360 - +2.4 103,363 + +1.2 103,363 + -0.7 103,363 + -2.3 103,364 - +0.8 103,364 - -0.8 103,364 - +0.8
Or see this region's nucleotide sequence