Strain Fitness in Rahnella sp. WP5 around EX31_RS04685

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04680 and EX31_RS04685 are separated by 239 nucleotidesEX31_RS04685 and EX31_RS04690 are separated by 106 nucleotides EX31_RS04680: EX31_RS04680 - uroporphyrinogen-III C-methyltransferase, at 51,000 to 52,382 _RS04680 EX31_RS04685: EX31_RS04685 - hypothetical protein, at 52,622 to 53,752 _RS04685 EX31_RS04690: EX31_RS04690 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 53,859 to 55,571 _RS04690 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.915 kb on - strand, within EX31_RS04680at 51.962 kb on + strand, within EX31_RS04680at 52.014 kb on + strand, within EX31_RS04680at 52.014 kb on + strand, within EX31_RS04680at 52.014 kb on + strand, within EX31_RS04680at 52.015 kb on - strand, within EX31_RS04680at 52.097 kb on - strand, within EX31_RS04680at 52.097 kb on - strand, within EX31_RS04680at 52.097 kb on - strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.140 kb on + strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.141 kb on - strand, within EX31_RS04680at 52.142 kb on + strand, within EX31_RS04680at 52.142 kb on + strand, within EX31_RS04680at 52.142 kb on + strand, within EX31_RS04680at 52.143 kb on - strand, within EX31_RS04680at 52.151 kb on + strand, within EX31_RS04680at 52.316 kb on + strandat 52.317 kb on - strandat 52.339 kb on + strandat 52.339 kb on + strandat 52.339 kb on + strandat 52.339 kb on + strandat 52.339 kb on + strandat 52.339 kb on + strandat 52.340 kb on - strandat 52.340 kb on - strandat 52.340 kb on - strandat 52.410 kb on + strandat 52.415 kb on + strandat 52.415 kb on + strandat 52.416 kb on - strandat 52.418 kb on + strandat 52.418 kb on + strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.466 kb on - strandat 52.467 kb on + strandat 52.472 kb on + strandat 52.491 kb on + strandat 52.492 kb on - strandat 52.501 kb on + strandat 52.572 kb on - strandat 52.598 kb on + strandat 52.598 kb on + strandat 52.631 kb on - strandat 52.652 kb on - strandat 52.675 kb on - strandat 53.018 kb on - strand, within EX31_RS04685at 53.018 kb on - strand, within EX31_RS04685at 53.020 kb on + strand, within EX31_RS04685at 53.020 kb on + strand, within EX31_RS04685at 53.021 kb on - strand, within EX31_RS04685at 53.224 kb on + strand, within EX31_RS04685at 53.225 kb on - strand, within EX31_RS04685at 53.225 kb on - strand, within EX31_RS04685at 53.278 kb on + strand, within EX31_RS04685at 53.347 kb on + strand, within EX31_RS04685at 53.461 kb on + strand, within EX31_RS04685at 53.461 kb on + strand, within EX31_RS04685at 53.477 kb on - strand, within EX31_RS04685at 53.691 kb on + strandat 53.859 kb on - strandat 53.867 kb on - strandat 53.867 kb on - strandat 53.867 kb on - strandat 53.878 kb on + strandat 53.878 kb on + strandat 53.878 kb on + strandat 53.908 kb on - strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.921 kb on + strandat 53.922 kb on - strandat 53.922 kb on - strandat 54.160 kb on + strand, within EX31_RS04690at 54.160 kb on + strand, within EX31_RS04690at 54.161 kb on - strand, within EX31_RS04690at 54.193 kb on - strand, within EX31_RS04690at 54.209 kb on + strand, within EX31_RS04690at 54.210 kb on - strand, within EX31_RS04690at 54.210 kb on - strand, within EX31_RS04690at 54.210 kb on - strand, within EX31_RS04690at 54.219 kb on + strand, within EX31_RS04690at 54.219 kb on + strand, within EX31_RS04690at 54.219 kb on + strand, within EX31_RS04690at 54.219 kb on + strand, within EX31_RS04690at 54.219 kb on + strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.220 kb on - strand, within EX31_RS04690at 54.225 kb on + strand, within EX31_RS04690at 54.225 kb on + strand, within EX31_RS04690at 54.225 kb on + strand, within EX31_RS04690at 54.225 kb on + strand, within EX31_RS04690at 54.225 kb on + strand, within EX31_RS04690at 54.226 kb on - strand, within EX31_RS04690at 54.226 kb on - strand, within EX31_RS04690at 54.226 kb on - strand, within EX31_RS04690at 54.226 kb on - strand, within EX31_RS04690at 54.227 kb on + strand, within EX31_RS04690at 54.228 kb on - strand, within EX31_RS04690at 54.228 kb on - strand, within EX31_RS04690at 54.228 kb on - strand, within EX31_RS04690at 54.228 kb on - strand, within EX31_RS04690at 54.282 kb on + strand, within EX31_RS04690at 54.282 kb on + strand, within EX31_RS04690at 54.283 kb on - strand, within EX31_RS04690at 54.293 kb on + strand, within EX31_RS04690at 54.352 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.353 kb on + strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.354 kb on - strand, within EX31_RS04690at 54.396 kb on + strand, within EX31_RS04690at 54.396 kb on + strand, within EX31_RS04690at 54.397 kb on - strand, within EX31_RS04690at 54.397 kb on - strand, within EX31_RS04690at 54.465 kb on + strand, within EX31_RS04690at 54.466 kb on - strand, within EX31_RS04690at 54.496 kb on + strand, within EX31_RS04690at 54.574 kb on + strand, within EX31_RS04690at 54.591 kb on + strand, within EX31_RS04690at 54.619 kb on + strand, within EX31_RS04690at 54.619 kb on + strand, within EX31_RS04690at 54.666 kb on + strand, within EX31_RS04690at 54.667 kb on - strand, within EX31_RS04690at 54.667 kb on - strand, within EX31_RS04690at 54.675 kb on + strand, within EX31_RS04690at 54.676 kb on - strand, within EX31_RS04690at 54.676 kb on - strand, within EX31_RS04690at 54.676 kb on - strand, within EX31_RS04690at 54.717 kb on + strand, within EX31_RS04690at 54.717 kb on + strand, within EX31_RS04690at 54.717 kb on + strand, within EX31_RS04690at 54.717 kb on + strand, within EX31_RS04690at 54.718 kb on - strand, within EX31_RS04690at 54.720 kb on + strand, within EX31_RS04690at 54.721 kb on - strand, within EX31_RS04690at 54.721 kb on - strand, within EX31_RS04690at 54.742 kb on - strand, within EX31_RS04690at 54.742 kb on - strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.751 kb on + strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690at 54.752 kb on - strand, within EX31_RS04690

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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51,915 - EX31_RS04680 0.66 -0.3
51,962 + EX31_RS04680 0.70 +0.5
52,014 + EX31_RS04680 0.73 -2.8
52,014 + EX31_RS04680 0.73 -1.1
52,014 + EX31_RS04680 0.73 +0.3
52,015 - EX31_RS04680 0.73 +0.8
52,097 - EX31_RS04680 0.79 -1.3
52,097 - EX31_RS04680 0.79 +1.2
52,097 - EX31_RS04680 0.79 -0.7
52,140 + EX31_RS04680 0.82 +1.6
52,140 + EX31_RS04680 0.82 -0.3
52,140 + EX31_RS04680 0.82 -0.3
52,140 + EX31_RS04680 0.82 +0.8
52,140 + EX31_RS04680 0.82 -1.3
52,140 + EX31_RS04680 0.82 -0.2
52,140 + EX31_RS04680 0.82 +0.7
52,140 + EX31_RS04680 0.82 -2.5
52,141 - EX31_RS04680 0.83 +0.3
52,141 - EX31_RS04680 0.83 +1.6
52,141 - EX31_RS04680 0.83 -0.3
52,141 - EX31_RS04680 0.83 -0.7
52,141 - EX31_RS04680 0.83 +0.2
52,141 - EX31_RS04680 0.83 +1.0
52,141 - EX31_RS04680 0.83 -0.8
52,141 - EX31_RS04680 0.83 -0.8
52,141 - EX31_RS04680 0.83 -0.5
52,141 - EX31_RS04680 0.83 +0.0
52,142 + EX31_RS04680 0.83 +1.5
52,142 + EX31_RS04680 0.83 +0.6
52,142 + EX31_RS04680 0.83 +0.3
52,143 - EX31_RS04680 0.83 +0.6
52,151 + EX31_RS04680 0.83 -1.2
52,316 + -1.4
52,317 - -1.7
52,339 + -0.5
52,339 + -0.5
52,339 + +2.4
52,339 + -0.6
52,339 + -0.5
52,339 + -0.1
52,340 - +0.3
52,340 - -0.4
52,340 - +0.5
52,410 + -0.5
52,415 + -2.0
52,415 + +0.3
52,416 - -0.5
52,418 + -0.7
52,418 + -0.7
52,466 - -1.2
52,466 - +1.3
52,466 - +0.8
52,466 - -0.8
52,466 - -0.5
52,466 - +1.0
52,466 - +1.3
52,467 + -0.2
52,472 + +0.5
52,491 + +0.6
52,492 - +0.4
52,501 + -1.2
52,572 - -1.0
52,598 + -0.0
52,598 + +0.1
52,631 - +0.9
52,652 - +0.7
52,675 - -0.5
53,018 - EX31_RS04685 0.35 +0.1
53,018 - EX31_RS04685 0.35 -0.3
53,020 + EX31_RS04685 0.35 +1.2
53,020 + EX31_RS04685 0.35 +0.5
53,021 - EX31_RS04685 0.35 +0.5
53,224 + EX31_RS04685 0.53 -0.4
53,225 - EX31_RS04685 0.53 -0.2
53,225 - EX31_RS04685 0.53 +0.7
53,278 + EX31_RS04685 0.58 +1.4
53,347 + EX31_RS04685 0.64 +1.4
53,461 + EX31_RS04685 0.74 +1.1
53,461 + EX31_RS04685 0.74 +1.5
53,477 - EX31_RS04685 0.76 +1.8
53,691 + +0.2
53,859 - -1.7
53,867 - -1.5
53,867 - +0.8
53,867 - +1.8
53,878 + +0.8
53,878 + -1.2
53,878 + -0.8
53,908 - -0.3
53,921 + +0.7
53,921 + -0.2
53,921 + -0.9
53,921 + -0.4
53,921 + +1.4
53,921 + -0.5
53,921 + +1.1
53,922 - +1.3
53,922 - -0.4
54,160 + EX31_RS04690 0.18 +2.1
54,160 + EX31_RS04690 0.18 +0.1
54,161 - EX31_RS04690 0.18 -1.9
54,193 - EX31_RS04690 0.19 +1.1
54,209 + EX31_RS04690 0.20 -1.0
54,210 - EX31_RS04690 0.20 -0.8
54,210 - EX31_RS04690 0.20 +0.8
54,210 - EX31_RS04690 0.20 -0.0
54,219 + EX31_RS04690 0.21 +1.0
54,219 + EX31_RS04690 0.21 -0.4
54,219 + EX31_RS04690 0.21 +0.5
54,219 + EX31_RS04690 0.21 -1.1
54,219 + EX31_RS04690 0.21 -1.2
54,220 - EX31_RS04690 0.21 -0.6
54,220 - EX31_RS04690 0.21 +1.3
54,220 - EX31_RS04690 0.21 -0.0
54,220 - EX31_RS04690 0.21 +1.6
54,220 - EX31_RS04690 0.21 +0.7
54,220 - EX31_RS04690 0.21 +0.3
54,225 + EX31_RS04690 0.21 +1.2
54,225 + EX31_RS04690 0.21 -1.7
54,225 + EX31_RS04690 0.21 -0.9
54,225 + EX31_RS04690 0.21 -0.4
54,225 + EX31_RS04690 0.21 +2.5
54,226 - EX31_RS04690 0.21 -0.8
54,226 - EX31_RS04690 0.21 +0.3
54,226 - EX31_RS04690 0.21 +0.4
54,226 - EX31_RS04690 0.21 +2.8
54,227 + EX31_RS04690 0.21 +1.0
54,228 - EX31_RS04690 0.22 +1.8
54,228 - EX31_RS04690 0.22 +0.2
54,228 - EX31_RS04690 0.22 +0.5
54,228 - EX31_RS04690 0.22 +0.2
54,282 + EX31_RS04690 0.25 -1.0
54,282 + EX31_RS04690 0.25 -1.7
54,283 - EX31_RS04690 0.25 -0.1
54,293 + EX31_RS04690 0.25 +1.2
54,352 + EX31_RS04690 0.29 -1.9
54,353 + EX31_RS04690 0.29 -0.2
54,353 + EX31_RS04690 0.29 -0.3
54,353 + EX31_RS04690 0.29 -0.9
54,353 + EX31_RS04690 0.29 -1.4
54,353 + EX31_RS04690 0.29 -1.0
54,353 + EX31_RS04690 0.29 -0.2
54,353 + EX31_RS04690 0.29 -2.5
54,353 + EX31_RS04690 0.29 -1.5
54,353 + EX31_RS04690 0.29 +0.4
54,353 + EX31_RS04690 0.29 -1.9
54,353 + EX31_RS04690 0.29 +0.6
54,353 + EX31_RS04690 0.29 -0.2
54,353 + EX31_RS04690 0.29 +0.8
54,353 + EX31_RS04690 0.29 -1.2
54,354 - EX31_RS04690 0.29 -0.1
54,354 - EX31_RS04690 0.29 -0.1
54,354 - EX31_RS04690 0.29 +0.9
54,354 - EX31_RS04690 0.29 -0.3
54,354 - EX31_RS04690 0.29 -0.5
54,354 - EX31_RS04690 0.29 +0.7
54,354 - EX31_RS04690 0.29 +0.3
54,354 - EX31_RS04690 0.29 +0.6
54,354 - EX31_RS04690 0.29 -0.8
54,354 - EX31_RS04690 0.29 +0.5
54,354 - EX31_RS04690 0.29 -0.4
54,354 - EX31_RS04690 0.29 +0.3
54,354 - EX31_RS04690 0.29 +0.1
54,354 - EX31_RS04690 0.29 +0.3
54,354 - EX31_RS04690 0.29 +0.6
54,354 - EX31_RS04690 0.29 +0.5
54,354 - EX31_RS04690 0.29 -1.7
54,354 - EX31_RS04690 0.29 -0.6
54,354 - EX31_RS04690 0.29 +0.1
54,354 - EX31_RS04690 0.29 -1.5
54,396 + EX31_RS04690 0.31 +0.1
54,396 + EX31_RS04690 0.31 +0.8
54,397 - EX31_RS04690 0.31 +0.9
54,397 - EX31_RS04690 0.31 -1.9
54,465 + EX31_RS04690 0.35 +0.7
54,466 - EX31_RS04690 0.35 -0.4
54,496 + EX31_RS04690 0.37 -0.5
54,574 + EX31_RS04690 0.42 -1.4
54,591 + EX31_RS04690 0.43 +1.0
54,619 + EX31_RS04690 0.44 +0.6
54,619 + EX31_RS04690 0.44 +0.8
54,666 + EX31_RS04690 0.47 +1.5
54,667 - EX31_RS04690 0.47 -0.5
54,667 - EX31_RS04690 0.47 -0.8
54,675 + EX31_RS04690 0.48 -1.7
54,676 - EX31_RS04690 0.48 +0.4
54,676 - EX31_RS04690 0.48 +0.5
54,676 - EX31_RS04690 0.48 -1.0
54,717 + EX31_RS04690 0.50 +1.8
54,717 + EX31_RS04690 0.50 -0.9
54,717 + EX31_RS04690 0.50 -0.5
54,717 + EX31_RS04690 0.50 +1.6
54,718 - EX31_RS04690 0.50 +0.4
54,720 + EX31_RS04690 0.50 +1.8
54,721 - EX31_RS04690 0.50 +0.5
54,721 - EX31_RS04690 0.50 -1.5
54,742 - EX31_RS04690 0.52 -0.0
54,742 - EX31_RS04690 0.52 +0.2
54,751 + EX31_RS04690 0.52 +1.8
54,751 + EX31_RS04690 0.52 +0.4
54,751 + EX31_RS04690 0.52 -0.1
54,751 + EX31_RS04690 0.52 +1.2
54,751 + EX31_RS04690 0.52 -0.4
54,751 + EX31_RS04690 0.52 -0.5
54,752 - EX31_RS04690 0.52 -1.3
54,752 - EX31_RS04690 0.52 -1.0
54,752 - EX31_RS04690 0.52 -0.9
54,752 - EX31_RS04690 0.52 +1.6
54,752 - EX31_RS04690 0.52 +0.2
54,752 - EX31_RS04690 0.52 +0.1

Or see this region's nucleotide sequence