Strain Fitness in Rahnella sp. WP5 around EX31_RS02780

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02775 and EX31_RS02780 are separated by 7 nucleotidesEX31_RS02780 and EX31_RS02785 are separated by 103 nucleotides EX31_RS02775: EX31_RS02775 - hypothetical protein, at 24,460 to 25,683 _RS02775 EX31_RS02780: EX31_RS02780 - oligosaccharide flippase family protein, at 25,691 to 26,908 _RS02780 EX31_RS02785: EX31_RS02785 - polysaccharide biosynthesis tyrosine autokinase, at 27,012 to 29,162 _RS02785 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.694 kb on + strand, within EX31_RS02775at 24.745 kb on + strand, within EX31_RS02775at 24.747 kb on - strand, within EX31_RS02775at 24.797 kb on + strand, within EX31_RS02775at 24.797 kb on + strand, within EX31_RS02775at 24.797 kb on + strand, within EX31_RS02775at 24.798 kb on - strand, within EX31_RS02775at 24.828 kb on + strand, within EX31_RS02775at 25.421 kb on + strand, within EX31_RS02775at 25.479 kb on - strand, within EX31_RS02775at 25.656 kb on + strandat 25.728 kb on - strandat 25.901 kb on - strand, within EX31_RS02780at 25.993 kb on - strand, within EX31_RS02780at 26.264 kb on - strand, within EX31_RS02780at 26.264 kb on - strand, within EX31_RS02780at 26.377 kb on + strand, within EX31_RS02780at 26.378 kb on - strand, within EX31_RS02780at 26.557 kb on + strand, within EX31_RS02780at 26.654 kb on + strand, within EX31_RS02780at 26.654 kb on + strand, within EX31_RS02780at 26.657 kb on - strand, within EX31_RS02780at 26.716 kb on + strand, within EX31_RS02780at 26.811 kb on - strandat 26.878 kb on - strandat 26.878 kb on - strandat 26.878 kb on - strandat 26.881 kb on + strandat 26.884 kb on + strandat 27.081 kb on - strandat 27.120 kb on - strandat 27.133 kb on - strandat 27.198 kb on - strandat 27.198 kb on - strandat 27.205 kb on + strandat 27.206 kb on - strandat 27.209 kb on + strandat 27.209 kb on + strandat 27.213 kb on + strandat 27.259 kb on - strand, within EX31_RS02785at 27.359 kb on + strand, within EX31_RS02785at 27.380 kb on + strand, within EX31_RS02785at 27.384 kb on - strand, within EX31_RS02785at 27.446 kb on + strand, within EX31_RS02785at 27.447 kb on - strand, within EX31_RS02785at 27.447 kb on - strand, within EX31_RS02785at 27.495 kb on - strand, within EX31_RS02785at 27.495 kb on - strand, within EX31_RS02785at 27.495 kb on - strand, within EX31_RS02785at 27.496 kb on + strand, within EX31_RS02785at 27.496 kb on + strand, within EX31_RS02785at 27.496 kb on + strand, within EX31_RS02785at 27.496 kb on + strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.497 kb on - strand, within EX31_RS02785at 27.498 kb on + strand, within EX31_RS02785at 27.498 kb on + strand, within EX31_RS02785at 27.498 kb on + strand, within EX31_RS02785at 27.498 kb on + strand, within EX31_RS02785at 27.498 kb on + strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.499 kb on - strand, within EX31_RS02785at 27.562 kb on - strand, within EX31_RS02785at 27.654 kb on + strand, within EX31_RS02785at 27.655 kb on - strand, within EX31_RS02785at 27.685 kb on - strand, within EX31_RS02785at 27.693 kb on - strand, within EX31_RS02785at 27.693 kb on - strand, within EX31_RS02785at 27.705 kb on - strand, within EX31_RS02785at 27.713 kb on + strand, within EX31_RS02785at 27.714 kb on - strand, within EX31_RS02785at 27.714 kb on - strand, within EX31_RS02785at 27.725 kb on - strand, within EX31_RS02785at 27.725 kb on - strand, within EX31_RS02785at 27.725 kb on - strand, within EX31_RS02785at 27.770 kb on + strand, within EX31_RS02785at 27.771 kb on - strand, within EX31_RS02785at 27.771 kb on - strand, within EX31_RS02785at 27.771 kb on - strand, within EX31_RS02785at 27.790 kb on - strand, within EX31_RS02785at 27.790 kb on - strand, within EX31_RS02785at 27.835 kb on - strand, within EX31_RS02785at 27.837 kb on - strand, within EX31_RS02785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
24,694 + EX31_RS02775 0.19 -0.6
24,745 + EX31_RS02775 0.23 +0.4
24,747 - EX31_RS02775 0.23 -0.9
24,797 + EX31_RS02775 0.28 -0.6
24,797 + EX31_RS02775 0.28 +0.4
24,797 + EX31_RS02775 0.28 -0.2
24,798 - EX31_RS02775 0.28 +1.8
24,828 + EX31_RS02775 0.30 +0.3
25,421 + EX31_RS02775 0.79 -2.2
25,479 - EX31_RS02775 0.83 -1.2
25,656 + +1.4
25,728 - -0.4
25,901 - EX31_RS02780 0.17 -0.9
25,993 - EX31_RS02780 0.25 -0.6
26,264 - EX31_RS02780 0.47 +1.5
26,264 - EX31_RS02780 0.47 -0.4
26,377 + EX31_RS02780 0.56 -0.3
26,378 - EX31_RS02780 0.56 -0.6
26,557 + EX31_RS02780 0.71 -1.4
26,654 + EX31_RS02780 0.79 -0.9
26,654 + EX31_RS02780 0.79 -0.6
26,657 - EX31_RS02780 0.79 +0.7
26,716 + EX31_RS02780 0.84 -0.9
26,811 - +0.8
26,878 - +0.4
26,878 - -1.6
26,878 - -0.2
26,881 + +0.4
26,884 + +0.5
27,081 - -0.4
27,120 - +2.2
27,133 - +1.0
27,198 - +0.4
27,198 - -0.9
27,205 + +0.4
27,206 - -1.4
27,209 + +0.7
27,209 + -0.2
27,213 + -0.8
27,259 - EX31_RS02785 0.11 +1.4
27,359 + EX31_RS02785 0.16 -0.1
27,380 + EX31_RS02785 0.17 -1.8
27,384 - EX31_RS02785 0.17 +0.1
27,446 + EX31_RS02785 0.20 -0.1
27,447 - EX31_RS02785 0.20 -0.3
27,447 - EX31_RS02785 0.20 -1.8
27,495 - EX31_RS02785 0.22 +0.6
27,495 - EX31_RS02785 0.22 +1.4
27,495 - EX31_RS02785 0.22 -1.9
27,496 + EX31_RS02785 0.23 +0.9
27,496 + EX31_RS02785 0.23 -1.6
27,496 + EX31_RS02785 0.23 +0.5
27,496 + EX31_RS02785 0.23 +0.9
27,497 - EX31_RS02785 0.23 +0.5
27,497 - EX31_RS02785 0.23 +0.2
27,497 - EX31_RS02785 0.23 -1.4
27,497 - EX31_RS02785 0.23 -0.3
27,497 - EX31_RS02785 0.23 +1.4
27,497 - EX31_RS02785 0.23 +0.1
27,497 - EX31_RS02785 0.23 +2.7
27,497 - EX31_RS02785 0.23 +1.4
27,498 + EX31_RS02785 0.23 -2.1
27,498 + EX31_RS02785 0.23 -1.4
27,498 + EX31_RS02785 0.23 -0.6
27,498 + EX31_RS02785 0.23 -2.7
27,498 + EX31_RS02785 0.23 -2.1
27,499 - EX31_RS02785 0.23 +1.7
27,499 - EX31_RS02785 0.23 +0.2
27,499 - EX31_RS02785 0.23 -0.6
27,499 - EX31_RS02785 0.23 +0.8
27,499 - EX31_RS02785 0.23 +0.9
27,499 - EX31_RS02785 0.23 -2.1
27,499 - EX31_RS02785 0.23 -0.0
27,562 - EX31_RS02785 0.26 +1.4
27,654 + EX31_RS02785 0.30 -2.9
27,655 - EX31_RS02785 0.30 +0.5
27,685 - EX31_RS02785 0.31 +1.4
27,693 - EX31_RS02785 0.32 +0.8
27,693 - EX31_RS02785 0.32 +1.1
27,705 - EX31_RS02785 0.32 -0.9
27,713 + EX31_RS02785 0.33 +1.4
27,714 - EX31_RS02785 0.33 +0.4
27,714 - EX31_RS02785 0.33 +0.0
27,725 - EX31_RS02785 0.33 +0.7
27,725 - EX31_RS02785 0.33 +0.8
27,725 - EX31_RS02785 0.33 -0.5
27,770 + EX31_RS02785 0.35 +0.1
27,771 - EX31_RS02785 0.35 +1.4
27,771 - EX31_RS02785 0.35 +2.7
27,771 - EX31_RS02785 0.35 +0.4
27,790 - EX31_RS02785 0.36 -0.2
27,790 - EX31_RS02785 0.36 +0.6
27,835 - EX31_RS02785 0.38 +1.4
27,837 - EX31_RS02785 0.38 -0.9

Or see this region's nucleotide sequence