Strain Fitness in Rahnella sp. WP5 around EX31_RS01930

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25095 and EX31_RS25910 are separated by 31 nucleotidesEX31_RS25910 and EX31_RS25100 are separated by 204 nucleotidesEX31_RS25100 and EX31_RS01930 are separated by 81 nucleotidesEX31_RS01930 and EX31_RS01935 overlap by 17 nucleotides EX31_RS25095: EX31_RS25095 - hypothetical protein, at 417,723 to 418,470 _RS25095 EX31_RS25910: EX31_RS25910 - hypothetical protein, at 418,502 to 418,747 _RS25910 EX31_RS25100: EX31_RS25100 - PAAR domain-containing protein, at 418,952 to 419,218 _RS25100 EX31_RS01930: EX31_RS01930 - type VI secretion protein, at 419,300 to 420,385 _RS01930 EX31_RS01935: EX31_RS01935 - type VI secretion protein VasK, at 420,369 to 423,776 _RS01935 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.580 kb on - strand, within EX31_RS25910at 418.585 kb on - strand, within EX31_RS25910at 418.881 kb on + strandat 418.882 kb on - strandat 418.887 kb on + strandat 418.892 kb on + strandat 418.923 kb on + strandat 419.005 kb on + strand, within EX31_RS25100at 419.148 kb on + strand, within EX31_RS25100at 419.148 kb on + strand, within EX31_RS25100at 419.148 kb on + strand, within EX31_RS25100at 419.149 kb on - strand, within EX31_RS25100at 419.211 kb on + strandat 419.212 kb on - strandat 419.216 kb on + strandat 419.216 kb on + strandat 419.217 kb on - strandat 419.217 kb on - strandat 419.248 kb on + strandat 419.289 kb on + strandat 419.374 kb on - strandat 419.377 kb on + strandat 419.377 kb on + strandat 419.377 kb on + strandat 419.377 kb on + strandat 419.377 kb on + strandat 419.378 kb on - strandat 419.403 kb on + strandat 419.444 kb on + strand, within EX31_RS01930at 419.444 kb on + strand, within EX31_RS01930at 419.528 kb on + strand, within EX31_RS01930at 419.529 kb on - strand, within EX31_RS01930at 419.530 kb on + strand, within EX31_RS01930at 419.530 kb on + strand, within EX31_RS01930at 419.531 kb on - strand, within EX31_RS01930at 419.569 kb on + strand, within EX31_RS01930at 419.569 kb on + strand, within EX31_RS01930at 419.583 kb on + strand, within EX31_RS01930at 419.586 kb on + strand, within EX31_RS01930at 419.642 kb on + strand, within EX31_RS01930at 419.653 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.671 kb on + strand, within EX31_RS01930at 419.686 kb on + strand, within EX31_RS01930at 419.687 kb on - strand, within EX31_RS01930at 419.721 kb on + strand, within EX31_RS01930at 419.722 kb on - strand, within EX31_RS01930at 419.739 kb on + strand, within EX31_RS01930at 419.739 kb on + strand, within EX31_RS01930at 419.740 kb on - strand, within EX31_RS01930at 419.899 kb on + strand, within EX31_RS01930at 419.923 kb on - strand, within EX31_RS01930at 419.977 kb on + strand, within EX31_RS01930at 420.006 kb on + strand, within EX31_RS01930at 420.035 kb on - strand, within EX31_RS01930at 420.076 kb on - strand, within EX31_RS01930at 420.160 kb on + strand, within EX31_RS01930at 420.160 kb on + strand, within EX31_RS01930at 420.160 kb on + strand, within EX31_RS01930at 420.206 kb on - strand, within EX31_RS01930at 420.224 kb on + strand, within EX31_RS01930at 420.224 kb on + strand, within EX31_RS01930at 420.224 kb on + strand, within EX31_RS01930at 420.224 kb on + strand, within EX31_RS01930at 420.224 kb on + strand, within EX31_RS01930at 420.225 kb on - strand, within EX31_RS01930at 420.225 kb on - strand, within EX31_RS01930at 420.225 kb on - strand, within EX31_RS01930at 420.225 kb on - strand, within EX31_RS01930at 420.225 kb on - strand, within EX31_RS01930at 420.344 kb on + strandat 420.345 kb on - strandat 420.376 kb on + strandat 420.377 kb on - strandat 420.377 kb on - strandat 420.379 kb on + strandat 420.379 kb on + strandat 420.379 kb on + strandat 420.379 kb on + strandat 420.380 kb on - strandat 420.380 kb on - strandat 420.380 kb on - strandat 420.383 kb on + strandat 420.383 kb on + strandat 420.431 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.449 kb on + strandat 420.450 kb on - strandat 420.450 kb on - strandat 420.450 kb on - strandat 420.451 kb on + strandat 420.512 kb on + strandat 420.513 kb on - strandat 420.523 kb on + strandat 420.790 kb on - strand, within EX31_RS01935at 420.814 kb on + strand, within EX31_RS01935at 420.817 kb on + strand, within EX31_RS01935at 420.817 kb on + strand, within EX31_RS01935at 420.817 kb on + strand, within EX31_RS01935at 420.818 kb on - strand, within EX31_RS01935at 420.820 kb on + strand, within EX31_RS01935at 421.038 kb on + strand, within EX31_RS01935at 421.038 kb on + strand, within EX31_RS01935at 421.038 kb on + strand, within EX31_RS01935at 421.038 kb on + strand, within EX31_RS01935at 421.039 kb on - strand, within EX31_RS01935at 421.039 kb on - strand, within EX31_RS01935at 421.039 kb on - strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.042 kb on + strand, within EX31_RS01935at 421.043 kb on - strand, within EX31_RS01935at 421.043 kb on - strand, within EX31_RS01935at 421.073 kb on + strand, within EX31_RS01935at 421.073 kb on + strand, within EX31_RS01935at 421.121 kb on + strand, within EX31_RS01935at 421.137 kb on + strand, within EX31_RS01935at 421.138 kb on - strand, within EX31_RS01935at 421.138 kb on - strand, within EX31_RS01935at 421.340 kb on + strand, within EX31_RS01935at 421.340 kb on + strand, within EX31_RS01935at 421.341 kb on - strand, within EX31_RS01935at 421.341 kb on - strand, within EX31_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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418,580 - EX31_RS25910 0.32 +1.2
418,585 - EX31_RS25910 0.34 +0.6
418,881 + +0.0
418,882 - -0.8
418,887 + -0.8
418,892 + -1.4
418,923 + +0.4
419,005 + EX31_RS25100 0.20 +1.4
419,148 + EX31_RS25100 0.73 -1.4
419,148 + EX31_RS25100 0.73 +3.2
419,148 + EX31_RS25100 0.73 +0.3
419,149 - EX31_RS25100 0.74 -0.4
419,211 + -0.4
419,212 - -2.0
419,216 + +0.2
419,216 + +0.1
419,217 - -0.1
419,217 - -0.2
419,248 + +0.2
419,289 + +0.9
419,374 - -0.8
419,377 + +1.8
419,377 + -2.3
419,377 + -0.4
419,377 + +1.5
419,377 + +0.8
419,378 - -0.4
419,403 + -1.8
419,444 + EX31_RS01930 0.13 -1.2
419,444 + EX31_RS01930 0.13 +0.8
419,528 + EX31_RS01930 0.21 +0.2
419,529 - EX31_RS01930 0.21 -0.0
419,530 + EX31_RS01930 0.21 -0.0
419,530 + EX31_RS01930 0.21 +1.9
419,531 - EX31_RS01930 0.21 -0.7
419,569 + EX31_RS01930 0.25 -0.3
419,569 + EX31_RS01930 0.25 +1.2
419,583 + EX31_RS01930 0.26 +0.2
419,586 + EX31_RS01930 0.26 +0.0
419,642 + EX31_RS01930 0.31 -0.6
419,653 + EX31_RS01930 0.33 +1.8
419,671 + EX31_RS01930 0.34 +0.3
419,671 + EX31_RS01930 0.34 +0.5
419,671 + EX31_RS01930 0.34 +0.2
419,671 + EX31_RS01930 0.34 -0.4
419,671 + EX31_RS01930 0.34 -0.4
419,671 + EX31_RS01930 0.34 +0.3
419,686 + EX31_RS01930 0.36 +1.5
419,687 - EX31_RS01930 0.36 -1.6
419,721 + EX31_RS01930 0.39 +2.0
419,722 - EX31_RS01930 0.39 +2.2
419,739 + EX31_RS01930 0.40 -1.6
419,739 + EX31_RS01930 0.40 +1.6
419,740 - EX31_RS01930 0.41 +0.2
419,899 + EX31_RS01930 0.55 +1.2
419,923 - EX31_RS01930 0.57 +0.2
419,977 + EX31_RS01930 0.62 +0.2
420,006 + EX31_RS01930 0.65 -0.8
420,035 - EX31_RS01930 0.68 +1.2
420,076 - EX31_RS01930 0.71 +1.2
420,160 + EX31_RS01930 0.79 -0.8
420,160 + EX31_RS01930 0.79 -0.6
420,160 + EX31_RS01930 0.79 +0.8
420,206 - EX31_RS01930 0.83 -0.6
420,224 + EX31_RS01930 0.85 +0.4
420,224 + EX31_RS01930 0.85 +0.9
420,224 + EX31_RS01930 0.85 +0.5
420,224 + EX31_RS01930 0.85 +0.9
420,224 + EX31_RS01930 0.85 +0.6
420,225 - EX31_RS01930 0.85 -0.1
420,225 - EX31_RS01930 0.85 +0.2
420,225 - EX31_RS01930 0.85 +1.2
420,225 - EX31_RS01930 0.85 +1.4
420,225 - EX31_RS01930 0.85 +1.8
420,344 + +0.8
420,345 - +1.3
420,376 + +1.0
420,377 - -2.1
420,377 - -0.8
420,379 + +1.2
420,379 + +1.5
420,379 + +1.4
420,379 + -0.6
420,380 - -0.6
420,380 - -1.6
420,380 - +1.7
420,383 + +0.8
420,383 + -0.8
420,431 + +1.2
420,449 + +2.2
420,449 + +1.8
420,449 + -1.6
420,449 + +0.6
420,449 + -1.4
420,449 + +1.2
420,449 + -0.4
420,449 + +0.3
420,449 + -1.4
420,449 + +0.8
420,449 + +1.2
420,449 + +0.2
420,450 - -1.1
420,450 - -0.4
420,450 - -0.1
420,451 + +0.3
420,512 + -1.4
420,513 - +0.8
420,523 + -0.3
420,790 - EX31_RS01935 0.12 +0.9
420,814 + EX31_RS01935 0.13 -2.1
420,817 + EX31_RS01935 0.13 +1.2
420,817 + EX31_RS01935 0.13 -0.1
420,817 + EX31_RS01935 0.13 -2.0
420,818 - EX31_RS01935 0.13 +0.8
420,820 + EX31_RS01935 0.13 +0.2
421,038 + EX31_RS01935 0.20 -0.8
421,038 + EX31_RS01935 0.20 -0.3
421,038 + EX31_RS01935 0.20 -1.8
421,038 + EX31_RS01935 0.20 -1.2
421,039 - EX31_RS01935 0.20 -0.8
421,039 - EX31_RS01935 0.20 +1.6
421,039 - EX31_RS01935 0.20 +0.2
421,042 + EX31_RS01935 0.20 -0.6
421,042 + EX31_RS01935 0.20 +1.8
421,042 + EX31_RS01935 0.20 +0.5
421,042 + EX31_RS01935 0.20 -0.1
421,042 + EX31_RS01935 0.20 +1.2
421,042 + EX31_RS01935 0.20 -1.8
421,042 + EX31_RS01935 0.20 +0.9
421,042 + EX31_RS01935 0.20 -0.1
421,043 - EX31_RS01935 0.20 -0.8
421,043 - EX31_RS01935 0.20 -0.4
421,073 + EX31_RS01935 0.21 -1.8
421,073 + EX31_RS01935 0.21 +0.4
421,121 + EX31_RS01935 0.22 +1.5
421,137 + EX31_RS01935 0.23 -2.5
421,138 - EX31_RS01935 0.23 -0.2
421,138 - EX31_RS01935 0.23 -0.6
421,340 + EX31_RS01935 0.28 +0.2
421,340 + EX31_RS01935 0.28 +0.4
421,341 - EX31_RS01935 0.29 +0.2
421,341 - EX31_RS01935 0.29 -0.8

Or see this region's nucleotide sequence