Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24595 and CA265_RS24600 are separated by 206 nucleotides CA265_RS24600 and CA265_RS24605 are separated by 402 nucleotides CA265_RS24605 and CA265_RS24610 are separated by 149 nucleotides
CA265_RS24595: CA265_RS24595 - hypothetical protein, at 5,995,113 to 5,995,958
_RS24595
CA265_RS24600: CA265_RS24600 - glutaminase, at 5,996,165 to 5,998,639
_RS24600
CA265_RS24605: CA265_RS24605 - hypothetical protein, at 5,999,042 to 5,999,287
_RS24605
CA265_RS24610: CA265_RS24610 - DNA polymerase IV, at 5,999,437 to 6,000,537
_RS24610
Position (kb) 5996
5997
5998
5999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5995.169 kb on - strand at 5995.308 kb on - strand, within CA265_RS24595 at 5995.314 kb on + strand, within CA265_RS24595 at 5995.324 kb on + strand, within CA265_RS24595 at 5995.349 kb on + strand, within CA265_RS24595 at 5995.350 kb on - strand, within CA265_RS24595 at 5995.376 kb on + strand, within CA265_RS24595 at 5995.380 kb on + strand, within CA265_RS24595 at 5995.381 kb on - strand, within CA265_RS24595 at 5995.381 kb on - strand, within CA265_RS24595 at 5995.399 kb on - strand, within CA265_RS24595 at 5995.400 kb on + strand, within CA265_RS24595 at 5995.507 kb on - strand, within CA265_RS24595 at 5995.507 kb on - strand, within CA265_RS24595 at 5995.638 kb on - strand, within CA265_RS24595 at 5995.650 kb on - strand, within CA265_RS24595 at 5995.661 kb on - strand, within CA265_RS24595 at 5995.665 kb on - strand, within CA265_RS24595 at 5995.679 kb on - strand, within CA265_RS24595 at 5995.679 kb on - strand, within CA265_RS24595 at 5995.686 kb on + strand, within CA265_RS24595 at 5995.686 kb on + strand, within CA265_RS24595 at 5995.686 kb on + strand, within CA265_RS24595 at 5995.687 kb on - strand, within CA265_RS24595 at 5995.768 kb on - strand, within CA265_RS24595 at 5995.782 kb on - strand, within CA265_RS24595 at 5995.782 kb on - strand, within CA265_RS24595 at 5995.869 kb on + strand, within CA265_RS24595 at 5995.893 kb on - strand at 5995.956 kb on + strand at 5995.956 kb on + strand at 5995.957 kb on - strand at 5995.957 kb on - strand at 5995.970 kb on + strand at 5995.989 kb on - strand at 5995.989 kb on - strand at 5996.090 kb on + strand at 5996.134 kb on + strand at 5996.164 kb on + strand at 5996.164 kb on + strand at 5996.165 kb on - strand at 5996.199 kb on + strand at 5996.270 kb on - strand at 5996.279 kb on - strand at 5996.279 kb on - strand at 5996.279 kb on - strand at 5996.282 kb on + strand at 5996.420 kb on + strand, within CA265_RS24600 at 5996.420 kb on + strand, within CA265_RS24600 at 5996.422 kb on + strand, within CA265_RS24600 at 5996.433 kb on + strand, within CA265_RS24600 at 5996.433 kb on + strand, within CA265_RS24600 at 5996.456 kb on + strand, within CA265_RS24600 at 5996.456 kb on + strand, within CA265_RS24600 at 5996.457 kb on - strand, within CA265_RS24600 at 5996.457 kb on - strand, within CA265_RS24600 at 5996.510 kb on + strand, within CA265_RS24600 at 5996.511 kb on - strand, within CA265_RS24600 at 5996.548 kb on - strand, within CA265_RS24600 at 5996.614 kb on + strand, within CA265_RS24600 at 5996.614 kb on + strand, within CA265_RS24600 at 5996.615 kb on - strand, within CA265_RS24600 at 5996.617 kb on + strand, within CA265_RS24600 at 5996.618 kb on - strand, within CA265_RS24600 at 5996.671 kb on + strand, within CA265_RS24600 at 5996.674 kb on + strand, within CA265_RS24600 at 5996.728 kb on + strand, within CA265_RS24600 at 5996.738 kb on + strand, within CA265_RS24600 at 5996.739 kb on - strand, within CA265_RS24600 at 5996.739 kb on - strand, within CA265_RS24600 at 5996.791 kb on - strand, within CA265_RS24600 at 5996.805 kb on + strand, within CA265_RS24600 at 5996.806 kb on - strand, within CA265_RS24600 at 5996.806 kb on - strand, within CA265_RS24600 at 5996.848 kb on - strand, within CA265_RS24600 at 5996.905 kb on + strand, within CA265_RS24600 at 5996.906 kb on - strand, within CA265_RS24600 at 5996.908 kb on + strand, within CA265_RS24600 at 5996.927 kb on + strand, within CA265_RS24600 at 5996.928 kb on - strand, within CA265_RS24600 at 5996.930 kb on - strand, within CA265_RS24600 at 5996.968 kb on + strand, within CA265_RS24600 at 5996.969 kb on - strand, within CA265_RS24600 at 5997.066 kb on + strand, within CA265_RS24600 at 5997.079 kb on - strand, within CA265_RS24600 at 5997.277 kb on - strand, within CA265_RS24600 at 5997.307 kb on + strand, within CA265_RS24600 at 5997.357 kb on + strand, within CA265_RS24600 at 5997.362 kb on - strand, within CA265_RS24600 at 5997.408 kb on - strand, within CA265_RS24600 at 5997.435 kb on - strand, within CA265_RS24600 at 5997.447 kb on - strand, within CA265_RS24600 at 5997.478 kb on + strand, within CA265_RS24600 at 5997.530 kb on + strand at 5997.530 kb on + strand, within CA265_RS24600 at 5997.573 kb on + strand, within CA265_RS24600 at 5997.575 kb on + strand, within CA265_RS24600 at 5997.588 kb on + strand, within CA265_RS24600 at 5997.608 kb on + strand, within CA265_RS24600 at 5997.618 kb on + strand, within CA265_RS24600 at 5997.619 kb on - strand, within CA265_RS24600 at 5997.628 kb on - strand, within CA265_RS24600 at 5997.628 kb on - strand, within CA265_RS24600 at 5997.655 kb on + strand, within CA265_RS24600 at 5997.656 kb on - strand, within CA265_RS24600 at 5997.762 kb on - strand, within CA265_RS24600 at 5997.762 kb on - strand, within CA265_RS24600 at 5997.771 kb on - strand, within CA265_RS24600 at 5997.771 kb on - strand at 5997.783 kb on + strand, within CA265_RS24600 at 5997.834 kb on - strand, within CA265_RS24600 at 5997.977 kb on + strand, within CA265_RS24600 at 5998.023 kb on + strand, within CA265_RS24600 at 5998.057 kb on - strand, within CA265_RS24600 at 5998.057 kb on - strand, within CA265_RS24600 at 5998.107 kb on + strand, within CA265_RS24600 at 5998.201 kb on + strand, within CA265_RS24600 at 5998.244 kb on + strand, within CA265_RS24600 at 5998.245 kb on - strand, within CA265_RS24600 at 5998.286 kb on + strand, within CA265_RS24600 at 5998.287 kb on - strand, within CA265_RS24600 at 5998.289 kb on - strand, within CA265_RS24600 at 5998.311 kb on + strand, within CA265_RS24600 at 5998.359 kb on - strand, within CA265_RS24600 at 5998.378 kb on + strand, within CA265_RS24600 at 5998.382 kb on + strand, within CA265_RS24600 at 5998.383 kb on - strand, within CA265_RS24600 at 5998.387 kb on + strand, within CA265_RS24600 at 5998.388 kb on - strand, within CA265_RS24600 at 5998.395 kb on + strand at 5998.445 kb on - strand at 5998.588 kb on - strand at 5998.588 kb on - strand at 5998.588 kb on - strand at 5998.601 kb on + strand at 5998.602 kb on - strand at 5998.676 kb on + strand at 5998.681 kb on - strand at 5998.731 kb on + strand at 5998.807 kb on - strand at 5999.004 kb on + strand at 5999.004 kb on + strand at 5999.005 kb on - strand at 5999.005 kb on - strand at 5999.005 kb on - strand at 5999.008 kb on + strand at 5999.009 kb on - strand at 5999.025 kb on - strand at 5999.063 kb on + strand at 5999.238 kb on + strand, within CA265_RS24605 at 5999.239 kb on - strand, within CA265_RS24605 at 5999.345 kb on + strand at 5999.346 kb on - strand at 5999.365 kb on + strand at 5999.366 kb on - strand at 5999.414 kb on - strand at 5999.419 kb on - strand at 5999.432 kb on - strand at 5999.493 kb on - strand at 5999.508 kb on + strand at 5999.508 kb on + strand at 5999.511 kb on + strand at 5999.512 kb on - strand at 5999.581 kb on + strand, within CA265_RS24610 at 5999.581 kb on + strand, within CA265_RS24610
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 5,995,169 - +0.7 5,995,308 - CA265_RS24595 0.23 +0.2 5,995,314 + CA265_RS24595 0.24 +0.1 5,995,324 + CA265_RS24595 0.25 -0.1 5,995,349 + CA265_RS24595 0.28 +2.1 5,995,350 - CA265_RS24595 0.28 +0.2 5,995,376 + CA265_RS24595 0.31 -0.2 5,995,380 + CA265_RS24595 0.32 -2.0 5,995,381 - CA265_RS24595 0.32 +1.1 5,995,381 - CA265_RS24595 0.32 -0.5 5,995,399 - CA265_RS24595 0.34 -0.3 5,995,400 + CA265_RS24595 0.34 +0.2 5,995,507 - CA265_RS24595 0.47 +0.2 5,995,507 - CA265_RS24595 0.47 -0.4 5,995,638 - CA265_RS24595 0.62 +0.2 5,995,650 - CA265_RS24595 0.63 +0.3 5,995,661 - CA265_RS24595 0.65 -0.5 5,995,665 - CA265_RS24595 0.65 -1.0 5,995,679 - CA265_RS24595 0.67 +0.1 5,995,679 - CA265_RS24595 0.67 +0.5 5,995,686 + CA265_RS24595 0.68 -0.2 5,995,686 + CA265_RS24595 0.68 -0.1 5,995,686 + CA265_RS24595 0.68 -1.9 5,995,687 - CA265_RS24595 0.68 -2.5 5,995,768 - CA265_RS24595 0.77 -1.7 5,995,782 - CA265_RS24595 0.79 +0.2 5,995,782 - CA265_RS24595 0.79 -0.2 5,995,869 + CA265_RS24595 0.89 -1.7 5,995,893 - +0.6 5,995,956 + +0.7 5,995,956 + +0.5 5,995,957 - -0.0 5,995,957 - -1.0 5,995,970 + +2.4 5,995,989 - -0.5 5,995,989 - +0.1 5,996,090 + -0.5 5,996,134 + +0.5 5,996,164 + -0.2 5,996,164 + -0.8 5,996,165 - -1.3 5,996,199 + -0.1 5,996,270 - -1.3 5,996,279 - +0.2 5,996,279 - +0.8 5,996,279 - +0.3 5,996,282 + -0.3 5,996,420 + CA265_RS24600 0.10 -0.2 5,996,420 + CA265_RS24600 0.10 -0.4 5,996,422 + CA265_RS24600 0.10 -0.4 5,996,433 + CA265_RS24600 0.11 -0.1 5,996,433 + CA265_RS24600 0.11 -0.7 5,996,456 + CA265_RS24600 0.12 -0.7 5,996,456 + CA265_RS24600 0.12 +0.1 5,996,457 - CA265_RS24600 0.12 +0.1 5,996,457 - CA265_RS24600 0.12 -0.1 5,996,510 + CA265_RS24600 0.14 +0.5 5,996,511 - CA265_RS24600 0.14 -0.2 5,996,548 - CA265_RS24600 0.15 -0.7 5,996,614 + CA265_RS24600 0.18 -0.8 5,996,614 + CA265_RS24600 0.18 +0.3 5,996,615 - CA265_RS24600 0.18 -0.1 5,996,617 + CA265_RS24600 0.18 +0.8 5,996,618 - CA265_RS24600 0.18 -0.5 5,996,671 + CA265_RS24600 0.20 -0.1 5,996,674 + CA265_RS24600 0.21 -1.0 5,996,728 + CA265_RS24600 0.23 -0.5 5,996,738 + CA265_RS24600 0.23 -0.6 5,996,739 - CA265_RS24600 0.23 -0.3 5,996,739 - CA265_RS24600 0.23 +0.2 5,996,791 - CA265_RS24600 0.25 -0.6 5,996,805 + CA265_RS24600 0.26 -0.3 5,996,806 - CA265_RS24600 0.26 -0.6 5,996,806 - CA265_RS24600 0.26 -0.9 5,996,848 - CA265_RS24600 0.28 -0.6 5,996,905 + CA265_RS24600 0.30 +1.7 5,996,906 - CA265_RS24600 0.30 -0.2 5,996,908 + CA265_RS24600 0.30 -3.0 5,996,927 + CA265_RS24600 0.31 -0.2 5,996,928 - CA265_RS24600 0.31 -0.5 5,996,930 - CA265_RS24600 0.31 +1.3 5,996,968 + CA265_RS24600 0.32 -0.1 5,996,969 - CA265_RS24600 0.32 -0.3 5,997,066 + CA265_RS24600 0.36 -0.2 5,997,079 - CA265_RS24600 0.37 -0.9 5,997,277 - CA265_RS24600 0.45 +0.2 5,997,307 + CA265_RS24600 0.46 +1.3 5,997,357 + CA265_RS24600 0.48 +0.8 5,997,362 - CA265_RS24600 0.48 -0.2 5,997,408 - CA265_RS24600 0.50 -0.9 5,997,435 - CA265_RS24600 0.51 +0.1 5,997,447 - CA265_RS24600 0.52 +0.8 5,997,478 + CA265_RS24600 0.53 +0.6 5,997,530 + +0.3 5,997,530 + CA265_RS24600 0.55 -0.5 5,997,573 + CA265_RS24600 0.57 -0.6 5,997,575 + CA265_RS24600 0.57 +0.0 5,997,588 + CA265_RS24600 0.57 -0.0 5,997,608 + CA265_RS24600 0.58 -0.8 5,997,618 + CA265_RS24600 0.59 -1.2 5,997,619 - CA265_RS24600 0.59 -0.9 5,997,628 - CA265_RS24600 0.59 -0.9 5,997,628 - CA265_RS24600 0.59 -0.2 5,997,655 + CA265_RS24600 0.60 -0.2 5,997,656 - CA265_RS24600 0.60 -0.4 5,997,762 - CA265_RS24600 0.65 -0.5 5,997,762 - CA265_RS24600 0.65 -0.0 5,997,771 - CA265_RS24600 0.65 -0.3 5,997,771 - -0.7 5,997,783 + CA265_RS24600 0.65 +0.3 5,997,834 - CA265_RS24600 0.67 +0.5 5,997,977 + CA265_RS24600 0.73 -1.3 5,998,023 + CA265_RS24600 0.75 -0.8 5,998,057 - CA265_RS24600 0.76 +0.0 5,998,057 - CA265_RS24600 0.76 -0.2 5,998,107 + CA265_RS24600 0.78 +1.6 5,998,201 + CA265_RS24600 0.82 -0.4 5,998,244 + CA265_RS24600 0.84 +0.5 5,998,245 - CA265_RS24600 0.84 +0.7 5,998,286 + CA265_RS24600 0.86 +0.5 5,998,287 - CA265_RS24600 0.86 -2.9 5,998,289 - CA265_RS24600 0.86 -1.0 5,998,311 + CA265_RS24600 0.87 +0.3 5,998,359 - CA265_RS24600 0.89 -1.0 5,998,378 + CA265_RS24600 0.89 +0.6 5,998,382 + CA265_RS24600 0.90 -0.6 5,998,383 - CA265_RS24600 0.90 -0.4 5,998,387 + CA265_RS24600 0.90 +0.5 5,998,388 - CA265_RS24600 0.90 +0.4 5,998,395 + +0.2 5,998,445 - +0.4 5,998,588 - +0.9 5,998,588 - -0.1 5,998,588 - -0.7 5,998,601 + +0.4 5,998,602 - -0.4 5,998,676 + -1.1 5,998,681 - +0.8 5,998,731 + +1.0 5,998,807 - +0.9 5,999,004 + +0.4 5,999,004 + -0.3 5,999,005 - -1.6 5,999,005 - -0.4 5,999,005 - +1.8 5,999,008 + +0.8 5,999,009 - -0.2 5,999,025 - -0.2 5,999,063 + -0.5 5,999,238 + CA265_RS24605 0.80 -0.1 5,999,239 - CA265_RS24605 0.80 +0.8 5,999,345 + +0.3 5,999,346 - -0.7 5,999,365 + -0.9 5,999,366 - -0.2 5,999,414 - -0.9 5,999,419 - +0.1 5,999,432 - +0.8 5,999,493 - +0.2 5,999,508 + +0.7 5,999,508 + -0.1 5,999,511 + +0.3 5,999,512 - -2.1 5,999,581 + CA265_RS24610 0.13 -0.1 5,999,581 + CA265_RS24610 0.13 -0.5
Or see this region's nucleotide sequence