Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23880 and CA265_RS23885 are separated by 201 nucleotides CA265_RS23885 and CA265_RS23890 overlap by 16 nucleotides CA265_RS23890 and CA265_RS23895 are separated by 119 nucleotides CA265_RS23895 and CA265_RS23900 overlap by 14 nucleotides
CA265_RS23880: CA265_RS23880 - preprotein translocase subunit SecA, at 5,824,747 to 5,828,223
_RS23880
CA265_RS23885: CA265_RS23885 - hypothetical protein, at 5,828,425 to 5,828,652
_RS23885
CA265_RS23890: CA265_RS23890 - hypothetical protein, at 5,828,637 to 5,828,945
_RS23890
CA265_RS23895: CA265_RS23895 - preprotein translocase, at 5,829,065 to 5,829,508
_RS23895
CA265_RS23900: CA265_RS23900 - N-acyl-L-amino acid amidohydrolase, at 5,829,495 to 5,830,679
_RS23900
Position (kb) 5829
5830 Strain fitness (log2 ratio) -1
0
1 at 5828.222 kb on - strand at 5828.280 kb on + strand at 5828.300 kb on + strand at 5828.307 kb on + strand at 5828.308 kb on - strand at 5828.436 kb on - strand at 5828.473 kb on - strand, within CA265_RS23885 at 5828.700 kb on + strand, within CA265_RS23890 at 5828.709 kb on - strand, within CA265_RS23890 at 5828.849 kb on - strand, within CA265_RS23890 at 5828.920 kb on + strand at 5828.920 kb on + strand at 5829.007 kb on - strand at 5829.025 kb on - strand at 5829.061 kb on - strand at 5829.072 kb on + strand at 5829.135 kb on + strand, within CA265_RS23895 at 5829.144 kb on + strand, within CA265_RS23895 at 5829.169 kb on - strand, within CA265_RS23895 at 5829.317 kb on + strand, within CA265_RS23895 at 5829.335 kb on + strand, within CA265_RS23895 at 5829.362 kb on + strand, within CA265_RS23895 at 5829.477 kb on + strand at 5829.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 5,828,222 - -1.7 5,828,280 + +0.1 5,828,300 + +0.6 5,828,307 + -0.5 5,828,308 - -1.5 5,828,436 - +0.3 5,828,473 - CA265_RS23885 0.21 +1.2 5,828,700 + CA265_RS23890 0.20 +0.2 5,828,709 - CA265_RS23890 0.23 +0.1 5,828,849 - CA265_RS23890 0.69 -0.8 5,828,920 + -1.7 5,828,920 + -0.2 5,829,007 - -0.7 5,829,025 - +1.3 5,829,061 - -0.2 5,829,072 + -0.1 5,829,135 + CA265_RS23895 0.16 -0.9 5,829,144 + CA265_RS23895 0.18 -1.7 5,829,169 - CA265_RS23895 0.23 +0.2 5,829,317 + CA265_RS23895 0.57 -0.1 5,829,335 + CA265_RS23895 0.61 -0.5 5,829,362 + CA265_RS23895 0.67 -0.8 5,829,477 + +0.0 5,829,493 + -0.6
Or see this region's nucleotide sequence