Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35420

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,546,635	-		BPHYT_RS35415	0.82	-0.5
3,546,763	+				-0.0
3,546,850	+				-0.2
3,546,928	-				+0.1
3,546,952	+				-0.9
3,546,952	+				+0.4
3,546,953	-				+0.2
3,547,115	+				-0.2
3,547,116	-				+0.1
3,547,281	+				+0.1
3,547,407	+				-0.3
3,547,450	+				+1.6
3,547,519	-				-0.8
3,547,614	+				+0.0
3,547,615	-				+1.2
3,547,669	+		BPHYT_RS35420	0.13	-1.1
3,547,801	+		BPHYT_RS35420	0.25	+0.5
3,547,870	+		BPHYT_RS35420	0.31	+0.4
3,547,871	-		BPHYT_RS35420	0.31	+0.5
3,547,995	-		BPHYT_RS35420	0.42	+0.4
3,548,383	+				+0.6
3,548,383	+		BPHYT_RS35420	0.77	+0.5
3,548,421	+		BPHYT_RS35420	0.80	-0.4
3,548,421	+		BPHYT_RS35420	0.80	-1.9
3,548,422	-		BPHYT_RS35420	0.80	+0.0
3,548,533	+				-0.2
3,548,534	-				+0.6
3,548,603	+				-1.8
3,548,604	-				+0.6
3,548,608	-				+0.9
3,548,608	-				-0.6
3,548,608	-				+0.9
3,548,608	-				+0.7
3,548,656	+				-1.4
3,549,097	+		BPHYT_RS35425	0.16	-0.4
3,549,151	-		BPHYT_RS35425	0.23	+0.3
3,549,228	+		BPHYT_RS35425	0.32	+2.1
3,549,259	-		BPHYT_RS35425	0.35	+0.2
3,549,309	+		BPHYT_RS35425	0.41	+1.6
3,549,363	+		BPHYT_RS35425	0.48	-1.4
3,549,430	+		BPHYT_RS35425	0.56	+1.8
3,549,430	+		BPHYT_RS35425	0.56	+0.4
3,549,431	-		BPHYT_RS35425	0.56	+0.1