Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34355

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,311,317	+		BPHYT_RS34345	0.86	-0.5
3,311,318	-		BPHYT_RS34345	0.86	-1.6
3,311,485	-				-0.1
3,311,487	+				-1.1
3,311,567	-				+0.6
3,311,877	-		BPHYT_RS34350	0.67	+0.5
3,311,897	+		BPHYT_RS34350	0.72	+0.1
3,311,897	+		BPHYT_RS34350	0.72	+0.2
3,311,898	-		BPHYT_RS34350	0.72	+0.9
3,311,907	-		BPHYT_RS34350	0.74	+0.3
3,312,032	-				+0.4
3,312,293	+				+0.0
3,312,293	+				-2.2
3,312,294	-				+0.3
3,312,443	-		BPHYT_RS34355	0.12	-1.9
3,312,443	-		BPHYT_RS34355	0.12	-1.6
3,312,443	-		BPHYT_RS34355	0.12	+0.2
3,312,556	+		BPHYT_RS34355	0.15	-0.6
3,312,976	+		BPHYT_RS34355	0.27	+0.0
3,313,018	-		BPHYT_RS34355	0.28	-0.8
3,313,200	+		BPHYT_RS34355	0.33	-0.4
3,313,201	-		BPHYT_RS34355	0.33	+0.0
3,313,201	-		BPHYT_RS34355	0.33	-0.0
3,313,491	+		BPHYT_RS34355	0.42	+0.5
3,313,491	+				+2.8
3,313,491	+		BPHYT_RS34355	0.42	+0.1
3,313,506	+		BPHYT_RS34355	0.42	-0.0
3,313,524	-		BPHYT_RS34355	0.42	-0.6
3,313,607	-		BPHYT_RS34355	0.45	+0.0
3,313,607	-		BPHYT_RS34355	0.45	+0.2
3,314,198	+		BPHYT_RS34355	0.62	+0.4
3,314,198	+		BPHYT_RS34355	0.62	+1.0
3,314,199	-		BPHYT_RS34355	0.62	-0.3
3,314,276	-		BPHYT_RS34355	0.64	+1.0
3,314,298	+		BPHYT_RS34355	0.65	-0.2
3,314,333	+		BPHYT_RS34355	0.66	-0.2
3,314,334	-		BPHYT_RS34355	0.66	-0.4
3,314,401	+		BPHYT_RS34355	0.67	-0.1
3,314,452	-		BPHYT_RS34355	0.69	-0.5
3,314,452	-		BPHYT_RS34355	0.69	+0.6
3,314,503	+		BPHYT_RS34355	0.70	-0.8
3,314,504	-		BPHYT_RS34355	0.70	-0.1
3,314,608	-		BPHYT_RS34355	0.73	-0.2
3,314,608	-				+1.2
3,314,773	+		BPHYT_RS34355	0.78	+0.6
3,314,773	+		BPHYT_RS34355	0.78	+0.7
3,314,773	+		BPHYT_RS34355	0.78	-0.1
3,314,774	-		BPHYT_RS34355	0.78	+0.2
3,314,840	+		BPHYT_RS34355	0.80	-0.6
3,314,840	+		BPHYT_RS34355	0.80	+0.2
3,314,841	-		BPHYT_RS34355	0.80	-0.1
3,315,011	-		BPHYT_RS34355	0.85	-0.2
3,315,011	-		BPHYT_RS34355	0.85	+1.1
3,315,011	-		BPHYT_RS34355	0.85	-0.2
3,315,011	-		BPHYT_RS34355	0.85	+0.7
3,315,011	-		BPHYT_RS34355	0.85	+0.0
3,315,021	+		BPHYT_RS34355	0.85	+0.1
3,315,094	+		BPHYT_RS34355	0.87	-0.0
3,315,201	+				+0.2
3,315,228	+				+0.3
3,315,228	+				+0.7
3,315,229	-				+0.2
3,315,265	+				-0.4
3,315,269	-				-0.2
3,315,396	+				+0.1
3,315,396	+				+0.2
3,315,397	-				-0.2
3,315,454	+				-0.8
3,315,455	-				-0.3
3,315,626	-				+0.4
3,315,640	+				-0.1
3,315,641	-				-0.0
3,315,641	-				-0.8
3,315,720	-				-1.5
3,315,808	-				-0.6
3,315,808	-				-0.1
3,315,821	-				-0.2
3,315,832	-				+0.2
3,315,883	+				+0.1
3,315,978	+				-0.2
3,315,978	+				-0.6
3,315,978	+				+0.2
3,316,126	+		BPHYT_RS34360	0.16	-0.0
3,316,126	+		BPHYT_RS34360	0.16	+0.1
3,316,126	+		BPHYT_RS34360	0.16	+0.7
3,316,181	-		BPHYT_RS34360	0.19	+1.1
3,316,238	-		BPHYT_RS34360	0.23	-0.3