Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33870

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,189,693	-				-1.1
3,189,984	+		BPHYT_RS33865	0.35	-0.8
3,189,984	+		BPHYT_RS33865	0.35	-0.2
3,189,984	+		BPHYT_RS33865	0.35	+1.2
3,189,985	-		BPHYT_RS33865	0.35	+1.1
3,189,985	-		BPHYT_RS33865	0.35	+0.4
3,189,985	-		BPHYT_RS33865	0.35	+0.5
3,189,985	-		BPHYT_RS33865	0.35	+1.2
3,189,985	-		BPHYT_RS33865	0.35	-0.1
3,189,988	-		BPHYT_RS33865	0.36	-0.2
3,189,988	-		BPHYT_RS33865	0.36	+0.6
3,189,988	-		BPHYT_RS33865	0.36	+0.6
3,189,993	+		BPHYT_RS33865	0.36	+0.1
3,189,993	+		BPHYT_RS33865	0.36	-0.2
3,190,024	+		BPHYT_RS33865	0.40	-0.4
3,190,099	+		BPHYT_RS33865	0.49	+0.2
3,190,466	-				-0.8
3,190,502	-				-0.7
3,190,515	+				+0.9
3,190,515	+				+0.5
3,190,881	-		BPHYT_RS33870	0.35	-1.1
3,190,881	-		BPHYT_RS33870	0.35	-1.0
3,190,899	+		BPHYT_RS33870	0.37	-0.3
3,190,900	-		BPHYT_RS33870	0.37	+0.4
3,190,900	-		BPHYT_RS33870	0.37	-2.3
3,191,153	+		BPHYT_RS33870	0.65	-0.3
3,191,184	+		BPHYT_RS33870	0.69	-1.3
3,191,255	+		BPHYT_RS33870	0.77	+1.0
3,191,255	+		BPHYT_RS33870	0.77	-0.3
3,191,288	-		BPHYT_RS33870	0.80	-0.4
3,191,323	+		BPHYT_RS33870	0.84	-2.6
3,191,324	-		BPHYT_RS33870	0.84	+1.0
3,191,511	-				-0.5
3,191,511	-				+0.1
3,191,554	+				-1.0
3,191,555	-				+0.2
3,191,555	-				-0.0
3,191,555	-				-0.5
3,191,555	-				+0.4
3,191,555	-				-0.2
3,191,809	+		BPHYT_RS33875	0.28	-1.4
3,191,810	-		BPHYT_RS33875	0.28	-2.4
3,191,810	-		BPHYT_RS33875	0.28	-0.8
3,191,829	+		BPHYT_RS33875	0.29	-0.3
3,191,932	+		BPHYT_RS33875	0.38	-0.2
3,192,106	+		BPHYT_RS33875	0.53	-1.0
3,192,107	-		BPHYT_RS33875	0.53	+0.1
3,192,107	-		BPHYT_RS33875	0.53	+0.4
3,192,225	+		BPHYT_RS33875	0.63	-0.1
3,192,225	+		BPHYT_RS33875	0.63	-1.3
3,192,266	-				+0.2
3,192,266	-		BPHYT_RS33875	0.66	+0.0
3,192,266	-		BPHYT_RS33875	0.66	+0.2