Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31410

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31405 and BPHYT_RS31410 are separated by 32 nucleotidesBPHYT_RS31410 and BPHYT_RS31415 are separated by 23 nucleotidesBPHYT_RS31415 and BPHYT_RS31420 are separated by 54 nucleotides BPHYT_RS31405: BPHYT_RS31405 - short-chain dehydrogenase, at 2,600,914 to 2,601,597 _RS31405 BPHYT_RS31410: BPHYT_RS31410 - D-amino acid oxidase, at 2,601,630 to 2,602,970 _RS31410 BPHYT_RS31415: BPHYT_RS31415 - amino acid ABC transporter permease, at 2,602,994 to 2,603,791 _RS31415 BPHYT_RS31420: BPHYT_RS31420 - ABC transporter substrate-binding protein, at 2,603,846 to 2,604,658 _RS31420 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -1 0 1at 2600.641 kb on + strandat 2600.642 kb on - strandat 2600.668 kb on - strandat 2601.290 kb on - strand, within BPHYT_RS31405at 2602.660 kb on - strand, within BPHYT_RS31410at 2602.663 kb on + strand, within BPHYT_RS31410at 2602.881 kb on + strandat 2603.272 kb on - strand, within BPHYT_RS31415

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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2,600,641 + +0.3
2,600,642 - -0.3
2,600,668 - +0.9
2,601,290 - BPHYT_RS31405 0.55 +1.3
2,602,660 - BPHYT_RS31410 0.77 +0.4
2,602,663 + BPHYT_RS31410 0.77 -0.4
2,602,881 + -0.6
2,603,272 - BPHYT_RS31415 0.35 +0.2

Or see this region's nucleotide sequence