Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30480 and BPHYT_RS30485 are separated by 101 nucleotides BPHYT_RS30485 and BPHYT_RS30490 are separated by 65 nucleotides BPHYT_RS30490 and BPHYT_RS30495 are separated by 4 nucleotides
BPHYT_RS30480: BPHYT_RS30480 - LysR family transcriptional regulator, at 2,397,996 to 2,398,967
_RS30480
BPHYT_RS30485: BPHYT_RS30485 - ABC transporter ATP-binding protein, at 2,399,069 to 2,400,151
_RS30485
BPHYT_RS30490: BPHYT_RS30490 - 2-haloalkanoic acid dehalogenase, at 2,400,217 to 2,400,930
_RS30490
BPHYT_RS30495: BPHYT_RS30495 - oxidoreductase, at 2,400,935 to 2,402,272
_RS30495
Position (kb) 2399
2400
2401 Strain fitness (log2 ratio) -1
0
1 at 2398.867 kb on + strand, within BPHYT_RS30480 at 2398.867 kb on + strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.869 kb on + strand, within BPHYT_RS30480 at 2399.027 kb on - strand at 2399.648 kb on + strand, within BPHYT_RS30485 at 2400.358 kb on + strand, within BPHYT_RS30490
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,398,867 + BPHYT_RS30480 0.90 -0.4 2,398,867 + BPHYT_RS30480 0.90 -1.6 2,398,868 - BPHYT_RS30480 0.90 +0.3 2,398,868 - BPHYT_RS30480 0.90 +0.2 2,398,868 - BPHYT_RS30480 0.90 +0.2 2,398,869 + BPHYT_RS30480 0.90 -0.1 2,399,027 - -0.2 2,399,648 + BPHYT_RS30485 0.53 -1.2 2,400,358 + BPHYT_RS30490 0.20 +0.5
Or see this region's nucleotide sequence