Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29415 and BPHYT_RS29420 are separated by 66 nucleotides BPHYT_RS29420 and BPHYT_RS29425 are separated by 203 nucleotides BPHYT_RS29425 and BPHYT_RS29430 are separated by 52 nucleotides
BPHYT_RS29415: BPHYT_RS29415 - 3-hydroxyisobutyrate dehydrogenase, at 2,154,507 to 2,155,397
_RS29415
BPHYT_RS29420: BPHYT_RS29420 - GntR family transcriptional regulator, at 2,155,464 to 2,156,168
_RS29420
BPHYT_RS29425: BPHYT_RS29425 - IclR family transcriptional regulator, at 2,156,372 to 2,157,196
_RS29425
BPHYT_RS29430: BPHYT_RS29430 - major facilitator transporter, at 2,157,249 to 2,158,550
_RS29430
Position (kb)
2156
2157
2158 Strain fitness (log2 ratio)
-1
0
1
2 at 2155.408 kb on + strand at 2155.409 kb on - strand at 2155.505 kb on - strand at 2155.505 kb on - strand at 2155.654 kb on + strand, within BPHYT_RS29420 at 2155.688 kb on - strand, within BPHYT_RS29420 at 2155.688 kb on - strand, within BPHYT_RS29420 at 2156.159 kb on + strand at 2156.286 kb on + strand at 2156.447 kb on + strand at 2156.594 kb on + strand, within BPHYT_RS29425 at 2156.768 kb on + strand, within BPHYT_RS29425 at 2156.768 kb on + strand, within BPHYT_RS29425 at 2156.768 kb on + strand, within BPHYT_RS29425 at 2156.792 kb on - strand, within BPHYT_RS29425 at 2156.918 kb on + strand, within BPHYT_RS29425 at 2157.760 kb on + strand, within BPHYT_RS29430 at 2157.761 kb on - strand, within BPHYT_RS29430 at 2157.761 kb on - strand, within BPHYT_RS29430 at 2157.776 kb on - strand, within BPHYT_RS29430
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,155,408 + +0.0 2,155,409 - -0.4 2,155,505 - +0.3 2,155,505 - +0.4 2,155,654 + BPHYT_RS29420 0.27 -1.0 2,155,688 - BPHYT_RS29420 0.32 +0.2 2,155,688 - BPHYT_RS29420 0.32 +0.4 2,156,159 + +0.4 2,156,286 + -0.3 2,156,447 + -0.3 2,156,594 + BPHYT_RS29425 0.27 -0.7 2,156,768 + BPHYT_RS29425 0.48 +0.1 2,156,768 + BPHYT_RS29425 0.48 +2.1 2,156,768 + BPHYT_RS29425 0.48 -0.2 2,156,792 - BPHYT_RS29425 0.51 -0.7 2,156,918 + BPHYT_RS29425 0.66 +0.4 2,157,760 + BPHYT_RS29430 0.39 -0.2 2,157,761 - BPHYT_RS29430 0.39 +0.9 2,157,761 - BPHYT_RS29430 0.39 -0.3 2,157,776 - BPHYT_RS29430 0.40 -0.3
Or see this region's nucleotide sequence