Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22510 and BPHYT_RS22515 are separated by 56 nucleotides BPHYT_RS22515 and BPHYT_RS22520 are separated by 13 nucleotides
BPHYT_RS22510: BPHYT_RS22510 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 608,553 to 609,827
_RS22510
BPHYT_RS22515: BPHYT_RS22515 - multidrug efflux RND transporter permease subunit, at 609,884 to 613,069
_RS22515
BPHYT_RS22520: BPHYT_RS22520 - RND transporter, at 613,083 to 614,684
_RS22520
Position (kb) 609
610
611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 609.211 kb on - strand, within BPHYT_RS22510 at 609.240 kb on + strand, within BPHYT_RS22510 at 609.241 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.644 kb on - strand, within BPHYT_RS22510 at 609.962 kb on - strand at 610.346 kb on + strand, within BPHYT_RS22515 at 610.346 kb on + strand, within BPHYT_RS22515 at 610.358 kb on + strand, within BPHYT_RS22515 at 610.359 kb on - strand, within BPHYT_RS22515 at 610.859 kb on + strand, within BPHYT_RS22515 at 610.918 kb on + strand, within BPHYT_RS22515 at 611.183 kb on + strand, within BPHYT_RS22515 at 611.767 kb on + strand, within BPHYT_RS22515 at 611.871 kb on - strand, within BPHYT_RS22515 at 611.871 kb on - strand at 612.062 kb on + strand, within BPHYT_RS22515 at 612.209 kb on + strand, within BPHYT_RS22515 at 612.360 kb on - strand, within BPHYT_RS22515 at 612.368 kb on + strand, within BPHYT_RS22515 at 612.371 kb on - strand, within BPHYT_RS22515 at 612.498 kb on - strand, within BPHYT_RS22515 at 612.582 kb on - strand, within BPHYT_RS22515 at 612.980 kb on + strand at 612.981 kb on - strand at 613.043 kb on + strand at 613.720 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 609,211 - BPHYT_RS22510 0.52 -1.7 609,240 + BPHYT_RS22510 0.54 -0.5 609,241 - BPHYT_RS22510 0.54 -2.0 609,430 - BPHYT_RS22510 0.69 -1.5 609,430 - BPHYT_RS22510 0.69 -2.5 609,644 - BPHYT_RS22510 0.86 -2.9 609,962 - -2.0 610,346 + BPHYT_RS22515 0.15 -1.5 610,346 + BPHYT_RS22515 0.15 -0.3 610,358 + BPHYT_RS22515 0.15 -1.5 610,359 - BPHYT_RS22515 0.15 -2.8 610,859 + BPHYT_RS22515 0.31 -1.0 610,918 + BPHYT_RS22515 0.32 -1.5 611,183 + BPHYT_RS22515 0.41 -1.9 611,767 + BPHYT_RS22515 0.59 -1.9 611,871 - BPHYT_RS22515 0.62 -1.8 611,871 - +1.3 612,062 + BPHYT_RS22515 0.68 -1.3 612,209 + BPHYT_RS22515 0.73 -1.4 612,360 - BPHYT_RS22515 0.78 -1.9 612,368 + BPHYT_RS22515 0.78 -2.1 612,371 - BPHYT_RS22515 0.78 -1.2 612,498 - BPHYT_RS22515 0.82 -1.3 612,582 - BPHYT_RS22515 0.85 -1.7 612,980 + -1.3 612,981 - -1.9 613,043 + -1.7 613,720 - BPHYT_RS22520 0.40 -2.1 613,759 - BPHYT_RS22520 0.42 -2.1 613,759 - BPHYT_RS22520 0.42 -1.5
Or see this region's nucleotide sequence