Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22505 and BPHYT_RS22510 are separated by 34 nucleotides BPHYT_RS22510 and BPHYT_RS22515 are separated by 56 nucleotides
BPHYT_RS22505: BPHYT_RS22505 - alpha/beta hydrolase, at 607,655 to 608,518
_RS22505
BPHYT_RS22510: BPHYT_RS22510 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 608,553 to 609,827
_RS22510
BPHYT_RS22515: BPHYT_RS22515 - multidrug efflux RND transporter permease subunit, at 609,884 to 613,069
_RS22515
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 607.787 kb on - strand, within BPHYT_RS22505 at 607.884 kb on - strand, within BPHYT_RS22505 at 608.255 kb on - strand, within BPHYT_RS22505 at 608.361 kb on - strand at 608.517 kb on - strand at 608.517 kb on - strand at 608.558 kb on + strand at 609.211 kb on - strand, within BPHYT_RS22510 at 609.240 kb on + strand, within BPHYT_RS22510 at 609.241 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.644 kb on - strand, within BPHYT_RS22510 at 609.962 kb on - strand at 610.346 kb on + strand, within BPHYT_RS22515 at 610.346 kb on + strand, within BPHYT_RS22515 at 610.358 kb on + strand, within BPHYT_RS22515 at 610.359 kb on - strand, within BPHYT_RS22515
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 607,787 - BPHYT_RS22505 0.15 -2.9 607,884 - BPHYT_RS22505 0.27 -4.6 608,255 - BPHYT_RS22505 0.69 -2.5 608,361 - -1.2 608,517 - -1.8 608,517 - -0.2 608,558 + -1.1 609,211 - BPHYT_RS22510 0.52 -1.7 609,240 + BPHYT_RS22510 0.54 -0.5 609,241 - BPHYT_RS22510 0.54 -2.0 609,430 - BPHYT_RS22510 0.69 -1.5 609,430 - BPHYT_RS22510 0.69 -2.5 609,644 - BPHYT_RS22510 0.86 -2.9 609,962 - -2.0 610,346 + BPHYT_RS22515 0.15 -1.5 610,346 + BPHYT_RS22515 0.15 -0.3 610,358 + BPHYT_RS22515 0.15 -1.5 610,359 - BPHYT_RS22515 0.15 -2.8
Or see this region's nucleotide sequence