Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21095

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21090 and BPHYT_RS21095 are separated by 335 nucleotidesBPHYT_RS21095 and BPHYT_RS21100 are separated by 45 nucleotides BPHYT_RS21090: BPHYT_RS21090 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 291,726 to 292,955 _RS21090 BPHYT_RS21095: BPHYT_RS21095 - omega amino acid--pyruvate aminotransferase, at 293,291 to 294,607 _RS21095 BPHYT_RS21100: BPHYT_RS21100 - methylmalonate-semialdehyde dehydrogenase, at 294,653 to 296,158 _RS21100 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1at 293.396 kb on + strandat 293.397 kb on - strandat 293.651 kb on - strand, within BPHYT_RS21095at 293.651 kb on - strand, within BPHYT_RS21095at 294.239 kb on - strand, within BPHYT_RS21095at 294.239 kb on - strand, within BPHYT_RS21095at 294.242 kb on + strand, within BPHYT_RS21095at 294.243 kb on - strand, within BPHYT_RS21095at 294.243 kb on - strand, within BPHYT_RS21095

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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293,396 + +0.2
293,397 - +0.3
293,651 - BPHYT_RS21095 0.27 +0.2
293,651 - BPHYT_RS21095 0.27 +0.1
294,239 - BPHYT_RS21095 0.72 +0.3
294,239 - BPHYT_RS21095 0.72 +0.3
294,242 + BPHYT_RS21095 0.72 +0.3
294,243 - BPHYT_RS21095 0.72 -0.4
294,243 - BPHYT_RS21095 0.72 -0.5

Or see this region's nucleotide sequence