Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20500 and BPHYT_RS20505 are separated by 497 nucleotides BPHYT_RS20505 and BPHYT_RS20510 are separated by 127 nucleotides BPHYT_RS20510 and BPHYT_RS20515 are separated by 65 nucleotides
BPHYT_RS20500: BPHYT_RS20500 - hypothetical protein, at 161,992 to 162,771
_RS20500
BPHYT_RS20505: BPHYT_RS20505 - carboxymethylenebutenolidase, at 163,269 to 163,976
_RS20505
BPHYT_RS20510: BPHYT_RS20510 - oxidoreductase, at 164,104 to 164,850
_RS20510
BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776
_RS20515
Position (kb) 163
164 Strain fitness (log2 ratio) -1
0
1
2 at 162.426 kb on - strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.442 kb on + strand, within BPHYT_RS20500 at 162.576 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.601 kb on - strand, within BPHYT_RS20500 at 162.608 kb on - strand, within BPHYT_RS20500 at 162.608 kb on - strand, within BPHYT_RS20500 at 162.765 kb on + strand at 162.765 kb on + strand at 162.765 kb on + strand at 162.765 kb on + strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.810 kb on + strand at 162.813 kb on - strand at 162.813 kb on - strand at 162.813 kb on - strand at 162.816 kb on + strand at 163.086 kb on - strand at 163.251 kb on + strand at 163.706 kb on + strand, within BPHYT_RS20505 at 163.974 kb on + strand at 164.106 kb on - strand at 164.490 kb on - strand, within BPHYT_RS20510
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 162,426 - BPHYT_RS20500 0.56 +0.3 162,434 + BPHYT_RS20500 0.57 -0.1 162,434 + BPHYT_RS20500 0.57 +0.6 162,434 + BPHYT_RS20500 0.57 +0.0 162,434 + BPHYT_RS20500 0.57 -0.1 162,442 + BPHYT_RS20500 0.58 +0.8 162,576 + BPHYT_RS20500 0.75 +0.1 162,600 + BPHYT_RS20500 0.78 +0.6 162,600 + BPHYT_RS20500 0.78 -0.1 162,600 + BPHYT_RS20500 0.78 -0.1 162,601 - BPHYT_RS20500 0.78 -0.3 162,608 - BPHYT_RS20500 0.79 +0.1 162,608 - BPHYT_RS20500 0.79 -0.4 162,765 + -0.9 162,765 + +2.0 162,765 + -0.5 162,765 + -0.1 162,766 - -0.2 162,766 - -1.2 162,766 - +0.1 162,766 - +1.0 162,810 + +0.3 162,813 - +0.1 162,813 - +1.8 162,813 - -0.7 162,816 + -0.2 163,086 - +0.2 163,251 + +0.6 163,706 + BPHYT_RS20505 0.62 -0.9 163,974 + -0.5 164,106 - -0.1 164,490 - BPHYT_RS20510 0.52 +0.3
Or see this region's nucleotide sequence