Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20435 and BPHYT_RS20440 are separated by 238 nucleotides BPHYT_RS20440 and BPHYT_RS20445 are separated by 15 nucleotides
BPHYT_RS20435: BPHYT_RS20435 - MFS transporter, at 147,155 to 148,531
_RS20435
BPHYT_RS20440: BPHYT_RS20440 - IclR family transcriptional regulator, at 148,770 to 149,552
_RS20440
BPHYT_RS20445: BPHYT_RS20445 - NAD-dependent dehydratase, at 149,568 to 150,632
_RS20445
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 147.908 kb on - strand, within BPHYT_RS20435 at 147.909 kb on + strand, within BPHYT_RS20435 at 147.910 kb on - strand, within BPHYT_RS20435 at 147.910 kb on - strand, within BPHYT_RS20435 at 147.910 kb on - strand, within BPHYT_RS20435 at 147.964 kb on - strand, within BPHYT_RS20435 at 148.065 kb on + strand, within BPHYT_RS20435 at 148.065 kb on + strand, within BPHYT_RS20435 at 148.066 kb on - strand, within BPHYT_RS20435 at 148.185 kb on - strand, within BPHYT_RS20435 at 148.675 kb on - strand at 149.426 kb on + strand, within BPHYT_RS20440 at 150.067 kb on + strand, within BPHYT_RS20445 at 150.068 kb on - strand, within BPHYT_RS20445 at 150.196 kb on + strand, within BPHYT_RS20445 at 150.196 kb on + strand, within BPHYT_RS20445 at 150.197 kb on - strand, within BPHYT_RS20445 at 150.199 kb on + strand, within BPHYT_RS20445 at 150.199 kb on + strand, within BPHYT_RS20445 at 150.290 kb on - strand, within BPHYT_RS20445 at 150.290 kb on - strand, within BPHYT_RS20445
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 147,908 - BPHYT_RS20435 0.55 +0.6 147,909 + BPHYT_RS20435 0.55 +0.5 147,910 - BPHYT_RS20435 0.55 -0.6 147,910 - BPHYT_RS20435 0.55 +0.8 147,910 - BPHYT_RS20435 0.55 -2.1 147,964 - BPHYT_RS20435 0.59 +0.1 148,065 + BPHYT_RS20435 0.66 -0.1 148,065 + BPHYT_RS20435 0.66 +0.9 148,066 - BPHYT_RS20435 0.66 -0.4 148,185 - BPHYT_RS20435 0.75 +0.3 148,675 - -0.4 149,426 + BPHYT_RS20440 0.84 -0.9 150,067 + BPHYT_RS20445 0.47 +0.2 150,068 - BPHYT_RS20445 0.47 -0.2 150,196 + BPHYT_RS20445 0.59 -0.0 150,196 + BPHYT_RS20445 0.59 -0.6 150,197 - BPHYT_RS20445 0.59 +0.4 150,199 + BPHYT_RS20445 0.59 -0.3 150,199 + BPHYT_RS20445 0.59 +0.3 150,290 - BPHYT_RS20445 0.68 +0.1 150,290 - BPHYT_RS20445 0.68 +0.3
Or see this region's nucleotide sequence