Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19680

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
4,426,684	+		BPHYT_RS19670	0.87	-0.4
4,426,684	+		BPHYT_RS19670	0.87	-0.2
4,426,684	+		BPHYT_RS19670	0.87	-0.5
4,426,685	-		BPHYT_RS19670	0.87	+0.9
4,426,685	-		BPHYT_RS19670	0.87	+1.2
4,426,765	+				+0.5
4,426,765	+				-0.1
4,426,765	+				+0.1
4,426,765	+				+0.3
4,426,765	+				-1.0
4,426,765	+				-0.0
4,426,765	+				+1.6
4,426,766	-				+0.4
4,426,766	-				-0.5
4,426,766	-				+0.3
4,426,766	-				+0.7
4,426,767	+				+0.0
4,426,767	+				+0.4
4,426,767	+				+0.2
4,426,767	+				-1.6
4,426,767	+				-0.3
4,426,767	+				+0.2
4,426,767	+				-0.7
4,426,768	-				-0.2
4,426,768	-				-0.2
4,426,768	-				-0.0
4,426,768	-				+0.6
4,426,897	+				+0.5
4,426,920	+				+0.3
4,426,920	+				-1.2
4,427,090	+		BPHYT_RS19675	0.27	-0.7
4,427,090	+		BPHYT_RS19675	0.27	+0.3
4,427,090	+		BPHYT_RS19675	0.27	-0.6
4,427,504	-				+0.3
4,427,515	-				+0.0
4,427,558	+				+0.3
4,427,595	+				-0.0
4,427,664	+				-0.0
4,427,664	+				-0.2
4,427,685	+				+0.3
4,427,692	+				-0.0
4,427,693	-				-0.1
4,428,142	+		BPHYT_RS19680	0.29	-0.2
4,428,156	+		BPHYT_RS19680	0.30	-0.6
4,428,193	+		BPHYT_RS19680	0.33	-0.8
4,428,193	+		BPHYT_RS19680	0.33	-1.9
4,428,194	-		BPHYT_RS19680	0.33	+0.2
4,428,194	-		BPHYT_RS19680	0.33	-1.1
4,428,194	-		BPHYT_RS19680	0.33	-0.8
4,428,274	+		BPHYT_RS19680	0.38	-0.4
4,428,274	+		BPHYT_RS19680	0.38	+0.6
4,428,275	-		BPHYT_RS19680	0.38	-1.7
4,428,353	-		BPHYT_RS19680	0.42	-0.4
4,428,439	+		BPHYT_RS19680	0.48	-1.0
4,428,440	-		BPHYT_RS19680	0.48	-1.1
4,428,475	+		BPHYT_RS19680	0.50	-1.4
4,428,521	+		BPHYT_RS19680	0.53	-0.9
4,428,574	+		BPHYT_RS19680	0.56	-1.2
4,428,575	-		BPHYT_RS19680	0.56	-1.9
4,428,575	-		BPHYT_RS19680	0.56	-1.6
4,428,662	-		BPHYT_RS19680	0.62	-1.1
4,428,662	-		BPHYT_RS19680	0.62	-1.6
4,428,709	+		BPHYT_RS19680	0.64	-0.7
4,428,793	+		BPHYT_RS19680	0.70	-1.0
4,428,793	+		BPHYT_RS19680	0.70	-1.4
4,428,794	-		BPHYT_RS19680	0.70	-0.6
4,428,799	+		BPHYT_RS19680	0.70	-1.4
4,428,800	-		BPHYT_RS19680	0.70	-1.4
4,428,859	+		BPHYT_RS19680	0.74	-1.8
4,428,865	+		BPHYT_RS19680	0.74	-0.4
4,428,865	+		BPHYT_RS19680	0.74	-1.9
4,428,866	-		BPHYT_RS19680	0.74	-0.8
4,428,866	-		BPHYT_RS19680	0.74	-2.3
4,428,895	+		BPHYT_RS19680	0.76	-1.3
4,428,896	-		BPHYT_RS19680	0.76	-0.4
4,428,983	-		BPHYT_RS19680	0.81	-2.4
4,429,080	-		BPHYT_RS19680	0.87	-0.8
4,429,098	-		BPHYT_RS19680	0.88	-1.0
4,429,369	+				-0.2
4,429,369	+				-0.6
4,429,369	+				-1.2
4,429,369	+				-0.4
4,429,370	-				-0.8
4,429,491	+				-0.5
4,429,491	+				+1.2
4,429,491	+				-2.8
4,429,491	+				-0.2
4,429,491	+				+0.0
4,429,492	-				-0.2
4,429,565	-				-0.3
4,429,565	-				-0.7
4,429,606	+				+0.5
4,429,639	-				-0.3
4,429,814	-		BPHYT_RS19685	0.23	-0.3
4,429,814	-		BPHYT_RS19685	0.23	+0.4
4,429,814	-		BPHYT_RS19685	0.23	-0.1
4,429,945	-		BPHYT_RS19685	0.37	-0.9
4,430,081	+		BPHYT_RS19685	0.52	+0.3
4,430,081	+				+1.9
4,430,081	+		BPHYT_RS19685	0.52	-0.5
4,430,082	-		BPHYT_RS19685	0.52	-0.4
4,430,082	-		BPHYT_RS19685	0.52	-0.0