Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18665 and BPHYT_RS18670 overlap by 8 nucleotides BPHYT_RS18670 and BPHYT_RS18675 overlap by 4 nucleotides
BPHYT_RS18665: BPHYT_RS18665 - GumN family protein, at 4,196,477 to 4,197,640
_RS18665
BPHYT_RS18670: BPHYT_RS18670 - peptide ABC transporter ATP-binding protein, at 4,197,633 to 4,198,652
_RS18670
BPHYT_RS18675: BPHYT_RS18675 - peptide ABC transporter ATP-binding protein, at 4,198,649 to 4,199,653
_RS18675
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4196.895 kb on + strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665 at 4197.291 kb on + strand, within BPHYT_RS18665 at 4197.292 kb on - strand, within BPHYT_RS18665 at 4197.292 kb on - strand, within BPHYT_RS18665 at 4197.415 kb on + strand, within BPHYT_RS18665 at 4197.415 kb on + strand, within BPHYT_RS18665 at 4197.497 kb on + strand, within BPHYT_RS18665 at 4197.512 kb on + strand, within BPHYT_RS18665 at 4197.512 kb on + strand, within BPHYT_RS18665 at 4197.931 kb on + strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.932 kb on - strand, within BPHYT_RS18670 at 4197.994 kb on + strand, within BPHYT_RS18670 at 4197.994 kb on + strand, within BPHYT_RS18670 at 4197.995 kb on - strand, within BPHYT_RS18670 at 4197.995 kb on - strand, within BPHYT_RS18670 at 4198.157 kb on + strand, within BPHYT_RS18670 at 4198.157 kb on + strand, within BPHYT_RS18670 at 4198.158 kb on - strand, within BPHYT_RS18670 at 4198.158 kb on - strand, within BPHYT_RS18670 at 4198.570 kb on + strand at 4198.571 kb on - strand at 4198.571 kb on - strand at 4198.571 kb on - strand at 4198.725 kb on - strand at 4198.788 kb on + strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.789 kb on - strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.917 kb on + strand, within BPHYT_RS18675 at 4198.980 kb on + strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4198.981 kb on - strand, within BPHYT_RS18675 at 4199.346 kb on + strand, within BPHYT_RS18675 at 4199.642 kb on + strand at 4199.643 kb on - strand at 4199.647 kb on + strand at 4199.647 kb on + strand at 4199.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 4,196,895 + BPHYT_RS18665 0.36 +0.6 4,196,896 - BPHYT_RS18665 0.36 -2.3 4,196,896 - BPHYT_RS18665 0.36 -1.3 4,196,896 - BPHYT_RS18665 0.36 -1.4 4,196,896 - BPHYT_RS18665 0.36 -1.9 4,197,105 + BPHYT_RS18665 0.54 -1.3 4,197,105 + BPHYT_RS18665 0.54 -1.9 4,197,262 - BPHYT_RS18665 0.67 -2.3 4,197,262 - BPHYT_RS18665 0.67 -0.4 4,197,291 + BPHYT_RS18665 0.70 -1.8 4,197,292 - BPHYT_RS18665 0.70 -0.9 4,197,292 - BPHYT_RS18665 0.70 -1.1 4,197,415 + BPHYT_RS18665 0.81 -2.8 4,197,415 + BPHYT_RS18665 0.81 -2.2 4,197,497 + BPHYT_RS18665 0.88 -2.9 4,197,512 + BPHYT_RS18665 0.89 -1.9 4,197,512 + BPHYT_RS18665 0.89 -1.9 4,197,931 + BPHYT_RS18670 0.29 -2.6 4,197,932 - BPHYT_RS18670 0.29 -1.7 4,197,932 - BPHYT_RS18670 0.29 -0.1 4,197,932 - BPHYT_RS18670 0.29 -0.5 4,197,994 + BPHYT_RS18670 0.35 -2.5 4,197,994 + BPHYT_RS18670 0.35 -1.5 4,197,995 - BPHYT_RS18670 0.35 +0.2 4,197,995 - BPHYT_RS18670 0.35 -0.9 4,198,157 + BPHYT_RS18670 0.51 -2.1 4,198,157 + BPHYT_RS18670 0.51 -3.0 4,198,158 - BPHYT_RS18670 0.51 -0.9 4,198,158 - BPHYT_RS18670 0.51 -1.2 4,198,570 + -0.4 4,198,571 - +0.8 4,198,571 - +0.2 4,198,571 - +0.3 4,198,725 - +0.6 4,198,788 + BPHYT_RS18675 0.14 -2.7 4,198,789 - BPHYT_RS18675 0.14 +0.7 4,198,789 - BPHYT_RS18675 0.14 +0.3 4,198,789 - BPHYT_RS18675 0.14 +0.5 4,198,917 + BPHYT_RS18675 0.27 -1.5 4,198,917 + BPHYT_RS18675 0.27 -1.6 4,198,980 + BPHYT_RS18675 0.33 +0.2 4,198,981 - BPHYT_RS18675 0.33 -1.4 4,198,981 - BPHYT_RS18675 0.33 +0.8 4,199,346 + BPHYT_RS18675 0.69 -1.9 4,199,642 + +1.1 4,199,643 - +0.6 4,199,647 + -0.9 4,199,647 + -0.4 4,199,648 - +0.8
Or see this region's nucleotide sequence