Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17170

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,888,677	-				-0.7
3,888,690	+				-0.6
3,888,691	-				-0.4
3,888,753	+				-0.2
3,888,754	-				-1.8
3,889,149	+		BPHYT_RS17165	0.54	-2.5
3,889,302	+		BPHYT_RS17165	0.75	-1.0
3,889,303	-		BPHYT_RS17165	0.75	-1.8
3,889,330	-		BPHYT_RS17165	0.78	-1.5
3,889,395	+		BPHYT_RS17165	0.87	-1.7
3,889,395	+				+1.1
3,889,396	-		BPHYT_RS17165	0.87	-2.0
3,889,396	-		BPHYT_RS17165	0.87	-1.0
3,889,463	-				+0.1
3,889,527	-				+0.5
3,889,553	+				-1.7
3,889,574	+				+0.2
3,889,575	-				-0.3
3,889,575	-				-0.1
3,889,575	-				-0.2
3,889,583	+				-0.2
3,889,583	+				+0.6
3,889,584	-				+0.2
3,889,587	+				-0.3
3,889,617	-				+0.0
3,889,617	-				-0.4
3,889,617	-				+0.1
3,889,617	-				+0.2
3,889,622	+				-0.3
3,889,622	+				+0.0
3,889,622	+				-0.5
3,889,622	+				+0.5
3,889,622	-				-0.7
3,889,623	-				-1.1
3,889,623	-				+0.3
3,889,623	-				+0.2
3,889,743	+		BPHYT_RS17170	0.64	-0.2
3,889,743	+		BPHYT_RS17170	0.64	-0.1
3,889,750	+		BPHYT_RS17170	0.67	-0.5
3,889,751	-		BPHYT_RS17170	0.68	-0.4
3,889,751	-		BPHYT_RS17170	0.68	-0.8
3,889,800	+				+0.3
3,889,800	+				-0.2
3,889,801	-				-1.9
3,889,801	-				-0.1
3,890,053	+		BPHYT_RS17175	0.37	+0.0
3,890,054	-		BPHYT_RS17175	0.37	-0.2
3,890,081	+		BPHYT_RS17175	0.43	-0.2
3,890,082	-		BPHYT_RS17175	0.44	-0.6
3,890,194	+		BPHYT_RS17175	0.70	-0.3
3,890,237	-		BPHYT_RS17175	0.80	-0.2
3,890,496	+		BPHYT_RS17180	0.19	-0.6
3,890,496	+		BPHYT_RS17180	0.19	-0.5
3,890,497	-		BPHYT_RS17180	0.19	-0.2
3,890,497	-		BPHYT_RS17180	0.19	-0.1
3,890,517	+		BPHYT_RS17180	0.21	-0.1
3,890,517	+		BPHYT_RS17180	0.21	+0.4
3,890,517	+		BPHYT_RS17180	0.21	+0.4
3,890,610	+		BPHYT_RS17180	0.32	+0.2
3,890,610	+		BPHYT_RS17180	0.32	+0.2
3,890,611	-		BPHYT_RS17180	0.32	+0.3
3,890,611	-		BPHYT_RS17180	0.32	-0.2
3,890,631	+		BPHYT_RS17180	0.35	+0.4
3,890,631	+		BPHYT_RS17180	0.35	-0.3
3,890,632	-		BPHYT_RS17180	0.35	+0.1
3,890,632	-		BPHYT_RS17180	0.35	+0.7
3,890,632	-		BPHYT_RS17180	0.35	-0.5
3,890,632	-		BPHYT_RS17180	0.35	+0.1
3,890,632	-		BPHYT_RS17180	0.35	-0.1
3,890,668	-				+0.7
3,890,731	-		BPHYT_RS17180	0.46	-0.1
3,890,731	-		BPHYT_RS17180	0.46	-0.2