Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16455

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,729,746	-				+0.0
3,729,839	+		BPHYT_RS16450	0.18	-0.6
3,729,840	-		BPHYT_RS16450	0.18	-0.5
3,729,840	-		BPHYT_RS16450	0.18	-0.4
3,729,840	-		BPHYT_RS16450	0.18	+0.3
3,729,907	+		BPHYT_RS16450	0.31	-0.1
3,729,907	+		BPHYT_RS16450	0.31	+0.3
3,729,970	+		BPHYT_RS16450	0.43	+0.5
3,730,063	-		BPHYT_RS16450	0.61	-0.4
3,730,084	+		BPHYT_RS16450	0.65	-0.0
3,730,084	+		BPHYT_RS16450	0.65	-0.5
3,730,084	+		BPHYT_RS16450	0.65	+0.6
3,730,085	-		BPHYT_RS16450	0.65	+0.5
3,730,116	+		BPHYT_RS16450	0.71	+1.1
3,730,116	+		BPHYT_RS16450	0.71	-0.1
3,730,116	+		BPHYT_RS16450	0.71	+0.1
3,730,117	-		BPHYT_RS16450	0.71	-0.0
3,730,117	-		BPHYT_RS16450	0.71	-0.9
3,730,117	-		BPHYT_RS16450	0.71	+0.1
3,730,289	+				-0.9
3,730,331	+				+0.3
3,730,332	-				-0.2
3,730,513	-		BPHYT_RS16455	0.17	-0.9
3,730,534	-		BPHYT_RS16455	0.20	-0.8
3,730,535	+		BPHYT_RS16455	0.20	-1.2
3,730,536	-		BPHYT_RS16455	0.20	-0.8
3,730,680	-		BPHYT_RS16455	0.37	-0.5
3,730,692	-		BPHYT_RS16455	0.39	-0.9
3,730,709	+		BPHYT_RS16455	0.41	-2.3
3,730,710	-		BPHYT_RS16455	0.41	-0.8
3,730,710	-		BPHYT_RS16455	0.41	-1.0
3,730,790	+		BPHYT_RS16455	0.50	-1.0
3,730,791	-		BPHYT_RS16455	0.51	+0.6
3,730,791	-		BPHYT_RS16455	0.51	-0.4
3,730,884	-		BPHYT_RS16455	0.62	-0.4
3,730,900	-		BPHYT_RS16455	0.64	+0.4
3,730,945	-		BPHYT_RS16455	0.69	+0.1
3,730,946	+		BPHYT_RS16455	0.69	-0.2
3,730,946	+		BPHYT_RS16455	0.69	-0.6
3,730,947	-		BPHYT_RS16455	0.69	-0.3
3,730,947	-		BPHYT_RS16455	0.69	-1.0
3,730,947	-		BPHYT_RS16455	0.69	-0.6
3,730,947	-		BPHYT_RS16455	0.69	-2.0
3,730,947	-		BPHYT_RS16455	0.69	-1.5
3,730,947	-		BPHYT_RS16455	0.69	-1.0
3,730,947	-		BPHYT_RS16455	0.69	-0.5
3,731,029	-		BPHYT_RS16455	0.79	-0.3
3,731,047	-		BPHYT_RS16455	0.82	-0.5
3,731,284	+				-0.4
3,731,284	+				-1.2
3,731,305	+				+0.1
3,731,315	+				-0.5
3,731,316	-				-0.0
3,731,328	-				-0.4
3,731,328	-				-0.0
3,731,328	-				-0.1
3,731,328	-				-0.0
3,731,400	+				-0.1
3,731,401	-				-1.9
3,731,443	+				-0.6
3,731,573	-				-0.2
3,731,645	+				-0.6
3,731,645	+				-0.2
3,731,645	+				-0.3
3,731,648	+				-0.1
3,731,648	+				-0.1
3,731,648	+				-0.1
3,731,649	-				-0.2
3,731,814	-		BPHYT_RS16460	0.19	+0.5
3,731,901	-		BPHYT_RS16460	0.26	+0.4
3,731,932	+		BPHYT_RS16460	0.28	-0.1
3,731,933	-		BPHYT_RS16460	0.28	-1.3
3,732,066	-		BPHYT_RS16460	0.38	-0.3
3,732,077	+		BPHYT_RS16460	0.39	+0.6
3,732,078	-		BPHYT_RS16460	0.39	-0.2
3,732,078	-		BPHYT_RS16460	0.39	-0.1
3,732,078	-		BPHYT_RS16460	0.39	-0.7
3,732,088	+		BPHYT_RS16460	0.39	-0.5
3,732,100	+		BPHYT_RS16460	0.40	-0.7