Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16115

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,654,942	+		BPHYT_RS16110	0.15	+0.5
3,654,942	+		BPHYT_RS16110	0.15	-0.5
3,655,415	+		BPHYT_RS16110	0.65	+2.1
3,655,518	+		BPHYT_RS16110	0.76	-1.4
3,655,523	-		BPHYT_RS16110	0.77	+0.4
3,655,523	-		BPHYT_RS16110	0.77	-0.1
3,655,572	+		BPHYT_RS16110	0.82	+0.2
3,655,720	+				-0.8
3,655,720	+				-0.5
3,655,720	+				-1.9
3,655,721	-				+0.8
3,656,147	+		BPHYT_RS16115	0.19	-0.2
3,656,229	-		BPHYT_RS16115	0.25	-0.3
3,656,400	-		BPHYT_RS16115	0.38	+0.5
3,656,515	+		BPHYT_RS16115	0.47	+0.5
3,656,528	+		BPHYT_RS16115	0.48	-1.0
3,656,529	-		BPHYT_RS16115	0.48	-0.8
3,656,529	-		BPHYT_RS16115	0.48	-1.9
3,656,627	+				-0.5
3,656,675	+		BPHYT_RS16115	0.59	-0.3
3,656,730	-		BPHYT_RS16115	0.63	-0.2
3,656,786	+		BPHYT_RS16115	0.67	-0.1
3,656,786	+		BPHYT_RS16115	0.67	-0.5
3,656,786	+		BPHYT_RS16115	0.67	-0.1
3,656,787	-		BPHYT_RS16115	0.67	+0.5
3,656,807	+		BPHYT_RS16115	0.69	-0.1
3,656,808	-		BPHYT_RS16115	0.69	-0.4
3,656,808	-		BPHYT_RS16115	0.69	-0.5
3,656,822	+		BPHYT_RS16115	0.70	-1.1
3,656,822	+		BPHYT_RS16115	0.70	-2.8
3,657,240	+				+0.6
3,657,244	+				-0.6
3,657,244	+				-0.9
3,657,244	+				+0.2
3,657,461	+		BPHYT_RS16120	0.22	+0.5
3,657,461	+		BPHYT_RS16120	0.22	+0.2
3,657,501	+		BPHYT_RS16120	0.27	+1.5
3,657,576	-		BPHYT_RS16120	0.37	+0.1
3,657,651	+		BPHYT_RS16120	0.46	+0.3
3,657,651	+		BPHYT_RS16120	0.46	-0.9
3,657,652	-		BPHYT_RS16120	0.46	-0.9
3,657,915	-		BPHYT_RS16120	0.80	-0.1
3,657,915	-		BPHYT_RS16120	0.80	+0.1
3,657,993	-				+0.1