Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15205

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
3,457,745	+		BPHYT_RS15200	0.72	-0.2
3,457,965	-				-0.2
3,458,014	+				+0.1
3,458,014	+				-0.3
3,458,084	+				+0.1
3,458,085	-				+0.2
3,458,085	-				-0.2
3,458,085	-				+0.2
3,458,124	-				+0.5
3,458,190	-				-0.3
3,458,195	+				-0.7
3,458,196	-				-0.8
3,458,235	+				+0.6
3,458,294	+				+0.1
3,458,362	+				-1.1
3,458,383	+				+0.0
3,458,384	-				+0.1
3,458,460	+				+0.1
3,458,602	+				+0.0
3,458,603	-				+0.0
3,458,603	-				-0.5
3,458,603	-				-0.2
3,458,606	+				-0.0
3,458,606	+				+0.1
3,458,644	+				+0.3
3,458,644	+				+0.7
3,458,645	-				-0.1
3,458,645	-				+0.2
3,458,763	+		BPHYT_RS15205	0.16	-0.9
3,458,763	+		BPHYT_RS15205	0.16	-0.3
3,458,763	+		BPHYT_RS15205	0.16	+0.0
3,458,763	+		BPHYT_RS15205	0.16	+0.3
3,458,764	-		BPHYT_RS15205	0.16	+1.5
3,458,816	+		BPHYT_RS15205	0.24	+0.5
3,458,817	-		BPHYT_RS15205	0.24	-0.0
3,458,854	-		BPHYT_RS15205	0.29	-1.0
3,458,854	-		BPHYT_RS15205	0.29	-1.1
3,458,873	+		BPHYT_RS15205	0.32	+1.4
3,458,874	-		BPHYT_RS15205	0.32	+1.1
3,458,874	-		BPHYT_RS15205	0.32	-0.1
3,458,874	-		BPHYT_RS15205	0.32	+1.1
3,458,951	+		BPHYT_RS15205	0.43	-0.1
3,458,951	+		BPHYT_RS15205	0.43	+0.8
3,458,952	-		BPHYT_RS15205	0.43	-0.1
3,458,952	-		BPHYT_RS15205	0.43	+0.2
3,458,952	-		BPHYT_RS15205	0.43	+0.4
3,458,952	-		BPHYT_RS15205	0.43	-0.5
3,458,952	-		BPHYT_RS15205	0.43	-1.3
3,458,952	-		BPHYT_RS15205	0.43	+0.2
3,459,012	-		BPHYT_RS15205	0.51	+0.9
3,459,032	+		BPHYT_RS15205	0.54	-0.3
3,459,032	+		BPHYT_RS15205	0.54	-0.0
3,459,032	+		BPHYT_RS15205	0.54	+0.0
3,459,032	+		BPHYT_RS15205	0.54	-0.0
3,459,035	+		BPHYT_RS15205	0.55	-0.9
3,459,035	+		BPHYT_RS15205	0.55	-2.0
3,459,035	+		BPHYT_RS15205	0.55	-0.1
3,459,095	+		BPHYT_RS15205	0.63	+0.1
3,459,164	+		BPHYT_RS15205	0.73	-0.1
3,459,164	+		BPHYT_RS15205	0.73	+0.8
3,459,165	-		BPHYT_RS15205	0.73	-0.5
3,459,165	-		BPHYT_RS15205	0.73	+0.3
3,459,215	+		BPHYT_RS15205	0.80	+0.3
3,459,215	+		BPHYT_RS15205	0.80	-0.2
3,459,216	-		BPHYT_RS15205	0.80	-0.9
3,459,216	-		BPHYT_RS15205	0.80	+0.5
3,459,275	+		BPHYT_RS15205	0.89	-1.7
3,459,275	+		BPHYT_RS15205	0.89	-3.2
3,459,276	-		BPHYT_RS15205	0.89	-0.2
3,459,360	-				-0.3
3,459,447	+				+0.2
3,459,450	+				+0.1
3,459,450	+				+0.3
3,459,450	+				+0.1
3,459,450	+				-0.5
3,459,450	+				+0.3
3,459,450	+				+0.1
3,459,451	-				-0.2
3,459,507	+				-0.6
3,459,507	+				-0.6
3,459,507	+				+0.1
3,459,507	+				+0.0
3,459,508	-				-0.4
3,459,508	-				-0.4
3,459,572	-				+0.1
3,459,624	+				-0.0
3,459,921	+		BPHYT_RS15210	0.13	-0.2
3,459,921	+		BPHYT_RS15210	0.13	-0.9
3,459,922	-		BPHYT_RS15210	0.13	-0.0
3,459,922	-		BPHYT_RS15210	0.13	-0.3
3,459,922	-		BPHYT_RS15210	0.13	+0.2
3,459,981	+		BPHYT_RS15210	0.15	+0.3
3,459,982	-		BPHYT_RS15210	0.15	+0.8
3,459,982	-				+1.1
3,460,003	+		BPHYT_RS15210	0.16	+0.8
3,460,003	+		BPHYT_RS15210	0.16	-2.0
3,460,004	-		BPHYT_RS15210	0.16	-0.1
3,460,017	-		BPHYT_RS15210	0.16	+0.1
3,460,017	-		BPHYT_RS15210	0.16	-1.9
3,460,017	-		BPHYT_RS15210	0.16	+0.0
3,460,146	+		BPHYT_RS15210	0.21	+0.0
3,460,146	+		BPHYT_RS15210	0.21	-0.1