Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14780 and BPHYT_RS14785 are separated by 98 nucleotides BPHYT_RS14785 and BPHYT_RS14790 are separated by 167 nucleotides BPHYT_RS14790 and BPHYT_RS14795 are separated by 134 nucleotides
BPHYT_RS14780: BPHYT_RS14780 - radical SAM protein, at 3,362,941 to 3,364,086
_RS14780
BPHYT_RS14785: BPHYT_RS14785 - AsnC family transcriptional regulator, at 3,364,185 to 3,364,673
_RS14785
BPHYT_RS14790: BPHYT_RS14790 - D-amino acid dehydrogenase, at 3,364,841 to 3,366,127
_RS14790
BPHYT_RS14795: BPHYT_RS14795 - acyl-CoA dehydrogenase, at 3,366,262 to 3,368,052
_RS14795
Position (kb) 3364
3365
3366
3367 Strain fitness (log2 ratio) -2
-1
0
1 at 3363.873 kb on + strand, within BPHYT_RS14780 at 3363.874 kb on - strand, within BPHYT_RS14780 at 3364.237 kb on + strand, within BPHYT_RS14785 at 3364.238 kb on - strand, within BPHYT_RS14785 at 3364.238 kb on - strand, within BPHYT_RS14785 at 3364.238 kb on - strand, within BPHYT_RS14785 at 3364.333 kb on + strand, within BPHYT_RS14785 at 3364.492 kb on + strand, within BPHYT_RS14785 at 3364.493 kb on - strand, within BPHYT_RS14785 at 3364.668 kb on - strand at 3364.726 kb on + strand at 3364.729 kb on + strand at 3364.729 kb on + strand at 3364.730 kb on - strand at 3364.730 kb on - strand at 3364.732 kb on + strand at 3364.771 kb on + strand at 3364.840 kb on + strand at 3364.840 kb on + strand at 3364.840 kb on + strand at 3364.841 kb on - strand at 3364.841 kb on - strand at 3364.841 kb on - strand at 3365.180 kb on + strand, within BPHYT_RS14790 at 3365.259 kb on + strand, within BPHYT_RS14790 at 3365.259 kb on + strand, within BPHYT_RS14790 at 3365.330 kb on + strand, within BPHYT_RS14790 at 3365.498 kb on + strand, within BPHYT_RS14790 at 3366.119 kb on + strand at 3366.119 kb on + strand at 3366.120 kb on - strand at 3366.120 kb on - strand at 3366.125 kb on + strand at 3366.264 kb on - strand at 3366.362 kb on + strand at 3366.362 kb on + strand at 3366.528 kb on + strand, within BPHYT_RS14795 at 3366.584 kb on + strand, within BPHYT_RS14795 at 3366.584 kb on + strand, within BPHYT_RS14795 at 3366.585 kb on - strand, within BPHYT_RS14795 at 3366.740 kb on + strand, within BPHYT_RS14795 at 3366.767 kb on + strand, within BPHYT_RS14795 at 3366.767 kb on + strand, within BPHYT_RS14795 at 3366.771 kb on - strand, within BPHYT_RS14795 at 3366.885 kb on - strand, within BPHYT_RS14795 at 3366.885 kb on - strand, within BPHYT_RS14795 at 3366.891 kb on - strand, within BPHYT_RS14795 at 3366.965 kb on + strand, within BPHYT_RS14795 at 3366.966 kb on - strand, within BPHYT_RS14795
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,363,873 + BPHYT_RS14780 0.81 -0.2 3,363,874 - BPHYT_RS14780 0.81 +0.2 3,364,237 + BPHYT_RS14785 0.11 -0.6 3,364,238 - BPHYT_RS14785 0.11 +0.4 3,364,238 - BPHYT_RS14785 0.11 +0.3 3,364,238 - BPHYT_RS14785 0.11 +0.2 3,364,333 + BPHYT_RS14785 0.30 -0.5 3,364,492 + BPHYT_RS14785 0.63 +0.2 3,364,493 - BPHYT_RS14785 0.63 +0.5 3,364,668 - +0.6 3,364,726 + +0.1 3,364,729 + -0.3 3,364,729 + -0.4 3,364,730 - +0.5 3,364,730 - +0.5 3,364,732 + +0.3 3,364,771 + +0.3 3,364,840 + +0.6 3,364,840 + +0.4 3,364,840 + +0.2 3,364,841 - +0.7 3,364,841 - +0.6 3,364,841 - +1.0 3,365,180 + BPHYT_RS14790 0.26 +0.9 3,365,259 + BPHYT_RS14790 0.32 +0.8 3,365,259 + BPHYT_RS14790 0.32 +0.8 3,365,330 + BPHYT_RS14790 0.38 +1.0 3,365,498 + BPHYT_RS14790 0.51 +1.2 3,366,119 + -0.0 3,366,119 + +0.2 3,366,120 - -0.1 3,366,120 - -0.5 3,366,125 + +0.1 3,366,264 - -0.2 3,366,362 + -0.2 3,366,362 + +0.3 3,366,528 + BPHYT_RS14795 0.15 -1.9 3,366,584 + BPHYT_RS14795 0.18 -0.2 3,366,584 + BPHYT_RS14795 0.18 +0.2 3,366,585 - BPHYT_RS14795 0.18 +0.1 3,366,740 + BPHYT_RS14795 0.27 -0.5 3,366,767 + BPHYT_RS14795 0.28 +0.2 3,366,767 + BPHYT_RS14795 0.28 +0.3 3,366,771 - BPHYT_RS14795 0.28 +0.0 3,366,885 - BPHYT_RS14795 0.35 -0.0 3,366,885 - BPHYT_RS14795 0.35 -2.3 3,366,891 - BPHYT_RS14795 0.35 +0.2 3,366,965 + BPHYT_RS14795 0.39 +0.6 3,366,966 - BPHYT_RS14795 0.39 -0.6
Or see this region's nucleotide sequence