Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14380
Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,282,418 | - | BPHYT_RS14380 | 0.25 | -2.4 | |
3,282,443 | - | BPHYT_RS14380 | 0.26 | -0.1 | |
3,282,470 | - | BPHYT_RS14380 | 0.28 | -1.5 | |
3,282,470 | - | BPHYT_RS14380 | 0.28 | -2.4 | |
3,282,545 | - | BPHYT_RS14380 | 0.32 | -1.4 | |
3,282,794 | - | BPHYT_RS14380 | 0.46 | -1.5 | |
3,283,125 | - | BPHYT_RS14380 | 0.64 | -1.3 | |
3,283,163 | - | BPHYT_RS14380 | 0.66 | -2.3 | |
3,283,163 | - | BPHYT_RS14380 | 0.66 | -2.2 | |
3,283,421 | - | BPHYT_RS14380 | 0.81 | -1.0 | |
3,283,421 | - | BPHYT_RS14380 | 0.81 | -1.0 | |
3,283,559 | - | BPHYT_RS14380 | 0.88 | -0.0 | |
3,283,583 | - | BPHYT_RS14380 | 0.90 | -0.2 | |
3,283,761 | - | -2.3 | |||
3,283,825 | - | -0.4 | |||
3,283,825 | - | -0.2 | |||
3,283,842 | - | +0.6 | |||
3,283,846 | - | -0.4 | |||
3,283,846 | - | -0.4 | |||
3,283,951 | + | +0.1 | |||
3,284,035 | + | BPHYT_RS14385 | 0.23 | -0.4 | |
3,284,035 | + | BPHYT_RS14385 | 0.23 | -0.7 | |
3,284,086 | + | BPHYT_RS14385 | 0.42 | -0.4 | |
3,284,276 | - | +0.5 | |||
3,284,363 | - | +0.0 | |||
3,284,386 | + | BPHYT_RS14390 | 0.10 | +0.1 | |
3,284,387 | - | BPHYT_RS14390 | 0.10 | +0.4 | |
3,284,569 | + | BPHYT_RS14390 | 0.22 | -0.1 | |
3,284,717 | - | BPHYT_RS14390 | 0.32 | -1.7 |
Or see this region's nucleotide sequence