Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS11695 and BPHYT_RS11700 are separated by 247 nucleotides BPHYT_RS11700 and BPHYT_RS11705 are separated by 220 nucleotides BPHYT_RS11705 and BPHYT_RS11710 are separated by 230 nucleotides
BPHYT_RS11695: BPHYT_RS11695 - hypothetical protein, at 2,652,774 to 2,653,061
_RS11695
BPHYT_RS11700: BPHYT_RS11700 - hypothetical protein, at 2,653,309 to 2,653,581
_RS11700
BPHYT_RS11705: BPHYT_RS11705 - hypothetical protein, at 2,653,802 to 2,654,521
_RS11705
BPHYT_RS11710: BPHYT_RS11710 - diguanylate cyclase, at 2,654,752 to 2,656,233
_RS11710
Position (kb)
2653
2654
2655 Strain fitness (log2 ratio)
-2
-1
0
1 at 2653.220 kb on - strand at 2653.225 kb on - strand at 2653.225 kb on - strand at 2653.770 kb on - strand at 2654.350 kb on + strand, within BPHYT_RS11705 at 2654.351 kb on - strand, within BPHYT_RS11705 at 2655.002 kb on - strand, within BPHYT_RS11710 at 2655.058 kb on - strand at 2655.114 kb on - strand, within BPHYT_RS11710 at 2655.386 kb on + strand, within BPHYT_RS11710 at 2655.438 kb on - strand, within BPHYT_RS11710 at 2655.438 kb on - strand, within BPHYT_RS11710
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,653,220 - -1.9 2,653,225 - -0.4 2,653,225 - -0.8 2,653,770 - +0.1 2,654,350 + BPHYT_RS11705 0.76 -0.5 2,654,351 - BPHYT_RS11705 0.76 -1.1 2,655,002 - BPHYT_RS11710 0.17 +0.1 2,655,058 - -0.9 2,655,114 - BPHYT_RS11710 0.24 -0.1 2,655,386 + BPHYT_RS11710 0.43 -0.0 2,655,438 - BPHYT_RS11710 0.46 +0.6 2,655,438 - BPHYT_RS11710 0.46 +1.0
Or see this region's nucleotide sequence