Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS11400 and BPHYT_RS11405 are separated by 88 nucleotides BPHYT_RS11405 and BPHYT_RS11410 are separated by 104 nucleotides BPHYT_RS11410 and BPHYT_RS11415 are separated by 205 nucleotides
BPHYT_RS11400: BPHYT_RS11400 - hypothetical protein, at 2,591,750 to 2,592,430
_RS11400
BPHYT_RS11405: BPHYT_RS11405 - hypothetical protein, at 2,592,519 to 2,593,736
_RS11405
BPHYT_RS11410: BPHYT_RS11410 - TetR family transcriptional regulator, at 2,593,841 to 2,594,470
_RS11410
BPHYT_RS11415: BPHYT_RS11415 - 4-hydroxyacetophenone monooxygenase, at 2,594,676 to 2,596,166
_RS11415
Position (kb)
2592
2593
2594 Strain fitness (log2 ratio)
-1
0
1 at 2591.521 kb on + strand at 2591.603 kb on + strand at 2591.604 kb on - strand at 2591.604 kb on - strand at 2591.680 kb on + strand at 2591.685 kb on + strand at 2591.685 kb on + strand at 2591.685 kb on + strand at 2591.686 kb on - strand at 2592.076 kb on + strand, within BPHYT_RS11400 at 2592.077 kb on - strand, within BPHYT_RS11400 at 2592.077 kb on - strand, within BPHYT_RS11400 at 2592.447 kb on - strand at 2592.447 kb on - strand at 2592.447 kb on - strand at 2592.451 kb on - strand at 2592.693 kb on + strand, within BPHYT_RS11405 at 2592.700 kb on - strand, within BPHYT_RS11405 at 2593.238 kb on + strand, within BPHYT_RS11405 at 2593.414 kb on - strand, within BPHYT_RS11405 at 2593.974 kb on + strand, within BPHYT_RS11410 at 2593.974 kb on + strand, within BPHYT_RS11410 at 2594.140 kb on + strand, within BPHYT_RS11410 at 2594.148 kb on + strand, within BPHYT_RS11410 at 2594.346 kb on + strand, within BPHYT_RS11410
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 2,591,521 + -0.1 2,591,603 + -0.5 2,591,604 - -1.1 2,591,604 - -0.1 2,591,680 + +0.2 2,591,685 + +0.2 2,591,685 + -0.3 2,591,685 + -0.0 2,591,686 - -1.3 2,592,076 + BPHYT_RS11400 0.48 -0.5 2,592,077 - BPHYT_RS11400 0.48 +0.1 2,592,077 - BPHYT_RS11400 0.48 +0.2 2,592,447 - +0.0 2,592,447 - -0.4 2,592,447 - -0.9 2,592,451 - -0.0 2,592,693 + BPHYT_RS11405 0.14 -0.9 2,592,700 - BPHYT_RS11405 0.15 -0.8 2,593,238 + BPHYT_RS11405 0.59 -0.7 2,593,414 - BPHYT_RS11405 0.73 -0.4 2,593,974 + BPHYT_RS11410 0.21 -0.5 2,593,974 + BPHYT_RS11410 0.21 +0.2 2,594,140 + BPHYT_RS11410 0.47 +0.2 2,594,148 + BPHYT_RS11410 0.49 -0.2 2,594,346 + BPHYT_RS11410 0.80 +0.2
Or see this region's nucleotide sequence