Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10830

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10820 and BPHYT_RS10825 overlap by 8 nucleotidesBPHYT_RS10825 and BPHYT_RS10830 are separated by 23 nucleotidesBPHYT_RS10830 and BPHYT_RS10835 overlap by 4 nucleotides BPHYT_RS10820: BPHYT_RS10820 - 4-chlorobenzoate--CoA ligase, at 2,459,644 to 2,461,221 _RS10820 BPHYT_RS10825: BPHYT_RS10825 - (2Fe-2S)-binding protein, at 2,461,214 to 2,461,744 _RS10825 BPHYT_RS10830: BPHYT_RS10830 - carbon monoxide dehydrogenase, at 2,461,768 to 2,462,589 _RS10830 BPHYT_RS10835: BPHYT_RS10835 - carbon monoxide dehydrogenase, at 2,462,586 to 2,465,624 _RS10835 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -2 -1 0 1at 2461.134 kb on - strandat 2461.736 kb on + strandat 2461.737 kb on - strandat 2462.284 kb on - strand, within BPHYT_RS10830at 2463.212 kb on + strand, within BPHYT_RS10835at 2463.377 kb on - strand, within BPHYT_RS10835

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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2,461,134 - +0.5
2,461,736 + -1.9
2,461,737 - -0.4
2,462,284 - BPHYT_RS10830 0.63 -1.1
2,463,212 + BPHYT_RS10835 0.21 -0.3
2,463,377 - BPHYT_RS10835 0.26 -1.0

Or see this region's nucleotide sequence