Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09325

Experiment: A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.005 mg/ml
2,113,979	-		BPHYT_RS09320	0.38	-0.1
2,113,979	-		BPHYT_RS09320	0.38	+0.3
2,114,014	+		BPHYT_RS09320	0.41	-0.2
2,114,016	+		BPHYT_RS09320	0.41	+0.1
2,114,017	-		BPHYT_RS09320	0.41	+1.3
2,114,017	-		BPHYT_RS09320	0.41	-0.3
2,114,050	+		BPHYT_RS09320	0.43	+0.1
2,114,051	-		BPHYT_RS09320	0.43	+0.4
2,114,051	-		BPHYT_RS09320	0.43	-0.9
2,114,266	-		BPHYT_RS09320	0.58	-0.8
2,114,693	+		BPHYT_RS09320	0.87	-0.3
2,114,694	-		BPHYT_RS09320	0.87	+1.5
2,114,694	-		BPHYT_RS09320	0.87	+0.1
2,114,725	+		BPHYT_RS09320	0.89	+0.2
2,114,726	-		BPHYT_RS09320	0.89	-0.8
2,114,726	-		BPHYT_RS09320	0.89	-0.8
2,114,840	-				+1.6
2,114,870	-				-1.0
2,114,894	+				-0.2
2,115,002	-				+0.1
2,115,169	-		BPHYT_RS09325	0.16	-1.0
2,115,171	+		BPHYT_RS09325	0.16	-1.2
2,115,309	+		BPHYT_RS09325	0.27	-1.2
2,115,309	+		BPHYT_RS09325	0.27	-0.4
2,115,309	+		BPHYT_RS09325	0.27	-1.4
2,115,378	+		BPHYT_RS09325	0.32	-0.1
2,115,379	-		BPHYT_RS09325	0.32	-0.6
2,115,548	+		BPHYT_RS09325	0.46	-1.1
2,115,935	+		BPHYT_RS09325	0.77	-1.1
2,115,936	-		BPHYT_RS09325	0.77	-0.7
2,115,936	-		BPHYT_RS09325	0.77	-0.5
2,115,936	-		BPHYT_RS09325	0.77	-0.7
2,115,951	+		BPHYT_RS09325	0.78	-0.8
2,115,951	+		BPHYT_RS09325	0.78	-0.0
2,115,951	+		BPHYT_RS09325	0.78	-0.8
2,116,056	+		BPHYT_RS09325	0.87	-0.7
2,116,131	+				-0.1
2,116,131	+				-0.6
2,116,211	-				+0.1
2,116,340	+				-0.3
2,116,486	+		BPHYT_RS09330	0.26	-0.7
2,116,487	-		BPHYT_RS09330	0.26	-0.1
2,116,506	+		BPHYT_RS09330	0.29	-0.8
2,116,506	+		BPHYT_RS09330	0.29	-0.7
2,116,508	+		BPHYT_RS09330	0.29	-1.1
2,116,509	-		BPHYT_RS09330	0.29	-0.3
2,116,569	+		BPHYT_RS09330	0.36	+0.2
2,116,570	-		BPHYT_RS09330	0.36	-1.2
2,116,571	+		BPHYT_RS09330	0.36	-0.5
2,116,571	+		BPHYT_RS09330	0.36	-0.2
2,116,571	+		BPHYT_RS09330	0.36	-0.7
2,116,571	+		BPHYT_RS09330	0.36	-0.4
2,116,572	-		BPHYT_RS09330	0.37	-0.4
2,116,731	-		BPHYT_RS09330	0.56	-0.3
2,116,731	-		BPHYT_RS09330	0.56	-0.1
2,116,757	+		BPHYT_RS09330	0.59	-0.6
2,116,758	-		BPHYT_RS09330	0.59	-0.9
2,116,758	-		BPHYT_RS09330	0.59	-1.0
2,116,758	-		BPHYT_RS09330	0.59	-0.3
2,116,826	-		BPHYT_RS09330	0.67	-0.7
2,116,839	-		BPHYT_RS09330	0.69	-0.3
2,117,036	+				-0.6
2,117,039	+				-0.9
2,117,039	+				-0.9
2,117,040	-				-0.5
2,117,040	-				-0.1
2,117,040	-				-0.6
2,117,040	-				-0.8
2,117,044	-				-0.1
2,117,078	+				-0.3
2,117,079	-				-0.2
2,117,163	+				-0.4