Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05730
Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,302,262 | + | -0.5 | |||
1,302,269 | + | -0.6 | |||
1,302,350 | - | +0.6 | |||
1,302,350 | - | -0.1 | |||
1,302,410 | + | +1.6 | |||
1,302,411 | - | -0.5 | |||
1,302,411 | - | +0.5 | |||
1,302,453 | - | +0.4 | |||
1,302,745 | + | -0.3 | |||
1,302,746 | - | -1.2 | |||
1,302,746 | - | +0.5 | |||
1,303,116 | + | BPHYT_RS05725 | 0.74 | -0.6 | |
1,303,117 | - | BPHYT_RS05725 | 0.74 | -0.1 | |
1,303,117 | - | BPHYT_RS05725 | 0.74 | +0.1 | |
1,303,407 | - | BPHYT_RS05730 | 0.43 | -1.0 | |
1,303,474 | + | BPHYT_RS05730 | 0.60 | -0.9 | |
1,303,474 | + | BPHYT_RS05730 | 0.60 | -0.4 | |
1,303,623 | + | +0.5 | |||
1,303,721 | - | -0.3 | |||
1,303,902 | + | -0.2 | |||
1,303,951 | - | -0.3 | |||
1,304,357 | - | BPHYT_RS05735 | 0.21 | +0.4 |
Or see this region's nucleotide sequence