Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02860

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02855 and BPHYT_RS02860 are separated by 78 nucleotidesBPHYT_RS02860 and BPHYT_RS02865 overlap by 1 nucleotides BPHYT_RS02855: BPHYT_RS02855 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 636,794 to 637,675 _RS02855 BPHYT_RS02860: BPHYT_RS02860 - membrane protein, at 637,754 to 638,386 _RS02860 BPHYT_RS02865: BPHYT_RS02865 - hypothetical protein, at 638,386 to 640,227 _RS02865 Position (kb) 637 638 639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 638.164 kb on - strand, within BPHYT_RS02860at 638.516 kb on - strandat 638.730 kb on - strand, within BPHYT_RS02865at 638.730 kb on - strand, within BPHYT_RS02865at 638.823 kb on - strand, within BPHYT_RS02865at 638.986 kb on - strand, within BPHYT_RS02865at 639.134 kb on + strand, within BPHYT_RS02865

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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638,164 - BPHYT_RS02860 0.65 -4.2
638,516 - -0.8
638,730 - BPHYT_RS02865 0.19 -2.7
638,730 - BPHYT_RS02865 0.19 -2.3
638,823 - BPHYT_RS02865 0.24 -2.3
638,986 - BPHYT_RS02865 0.33 -2.6
639,134 + BPHYT_RS02865 0.41 -0.8

Or see this region's nucleotide sequence