Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01930 and BPHYT_RS01935 are separated by 608 nucleotides BPHYT_RS01935 and BPHYT_RS01940 are separated by 129 nucleotides
BPHYT_RS01930: BPHYT_RS01930 - hypothetical protein, at 438,724 to 439,368
_RS01930
BPHYT_RS01935: BPHYT_RS01935 - lipoprotein, at 439,977 to 440,609
_RS01935
BPHYT_RS01940: BPHYT_RS01940 - 16S rRNA methyltransferase, at 440,739 to 441,620
_RS01940
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 439.401 kb on + strand at 439.401 kb on + strand at 439.401 kb on + strand at 439.401 kb on + strand at 439.402 kb on - strand at 439.412 kb on - strand at 439.537 kb on - strand at 439.538 kb on + strand at 439.538 kb on + strand at 439.539 kb on - strand at 439.539 kb on - strand at 439.539 kb on - strand at 439.622 kb on + strand at 439.623 kb on - strand at 439.655 kb on + strand at 439.715 kb on + strand at 439.716 kb on - strand at 439.741 kb on + strand at 440.006 kb on + strand at 440.007 kb on - strand at 440.007 kb on - strand at 440.007 kb on - strand at 440.091 kb on - strand, within BPHYT_RS01935 at 440.325 kb on + strand, within BPHYT_RS01935 at 440.325 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand, within BPHYT_RS01935 at 440.357 kb on + strand at 440.357 kb on + strand, within BPHYT_RS01935 at 440.358 kb on - strand at 440.358 kb on - strand, within BPHYT_RS01935 at 440.358 kb on - strand, within BPHYT_RS01935 at 440.376 kb on + strand, within BPHYT_RS01935 at 440.377 kb on - strand, within BPHYT_RS01935 at 440.424 kb on - strand, within BPHYT_RS01935 at 440.443 kb on - strand, within BPHYT_RS01935 at 440.565 kb on - strand at 440.565 kb on - strand at 440.648 kb on - strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.779 kb on + strand at 440.862 kb on + strand, within BPHYT_RS01940 at 440.919 kb on + strand, within BPHYT_RS01940 at 440.920 kb on - strand, within BPHYT_RS01940 at 441.006 kb on + strand, within BPHYT_RS01940 at 441.299 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.343 kb on + strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.344 kb on - strand, within BPHYT_RS01940 at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.565 kb on + strand at 441.566 kb on - strand at 441.566 kb on - strand at 441.567 kb on + strand at 441.568 kb on - strand at 441.568 kb on - strand at 441.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 438,989 + BPHYT_RS01930 0.41 +1.2 438,989 + BPHYT_RS01930 0.41 -0.5 438,989 + BPHYT_RS01930 0.41 +0.0 438,990 - BPHYT_RS01930 0.41 +0.1 438,990 - BPHYT_RS01930 0.41 +0.9 438,990 - BPHYT_RS01930 0.41 +0.4 438,990 - BPHYT_RS01930 0.41 +0.6 439,401 + -0.4 439,401 + -0.3 439,401 + -0.4 439,401 + -0.6 439,402 - -0.1 439,412 - -0.4 439,537 - +0.8 439,538 + +0.2 439,538 + +0.0 439,539 - +1.3 439,539 - +1.6 439,539 - +1.7 439,622 + -1.8 439,623 - +1.8 439,655 + +0.1 439,715 + +0.2 439,716 - +1.5 439,741 + -0.1 440,006 + +0.2 440,007 - -0.6 440,007 - +1.4 440,007 - +2.7 440,091 - BPHYT_RS01935 0.18 +1.2 440,325 + BPHYT_RS01935 0.55 +1.5 440,325 + BPHYT_RS01935 0.55 +1.2 440,357 + BPHYT_RS01935 0.60 +1.4 440,357 + BPHYT_RS01935 0.60 +2.3 440,357 + BPHYT_RS01935 0.60 +1.3 440,357 + BPHYT_RS01935 0.60 +1.6 440,357 + BPHYT_RS01935 0.60 +0.9 440,357 + +2.2 440,357 + BPHYT_RS01935 0.60 +1.8 440,358 - +1.2 440,358 - BPHYT_RS01935 0.60 +0.6 440,358 - BPHYT_RS01935 0.60 +1.4 440,376 + BPHYT_RS01935 0.63 +1.1 440,377 - BPHYT_RS01935 0.63 +1.0 440,424 - BPHYT_RS01935 0.71 +2.8 440,443 - BPHYT_RS01935 0.74 +1.5 440,565 - +0.5 440,565 - -0.6 440,648 - -0.3 440,779 + +0.4 440,779 + -0.2 440,779 + -0.2 440,862 + BPHYT_RS01940 0.14 +1.9 440,919 + BPHYT_RS01940 0.20 -0.4 440,920 - BPHYT_RS01940 0.21 -0.0 441,006 + BPHYT_RS01940 0.30 +0.1 441,299 + BPHYT_RS01940 0.63 -0.4 441,343 + BPHYT_RS01940 0.68 -0.3 441,343 + BPHYT_RS01940 0.68 -0.8 441,344 - BPHYT_RS01940 0.69 +0.3 441,344 - BPHYT_RS01940 0.69 -0.2 441,565 + -0.2 441,565 + +0.1 441,565 + -0.1 441,565 + +0.6 441,565 + +0.1 441,565 + -1.0 441,566 - -0.4 441,566 - -3.2 441,567 + -1.8 441,568 - -0.3 441,568 - +0.4 441,578 + -0.2
Or see this region's nucleotide sequence