Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13545

Experiment: CDM1 without FolicAcid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13540 and BBR_RS13545 are separated by 228 nucleotidesBBR_RS13545 and BBR_RS13550 are separated by 108 nucleotidesBBR_RS13550 and BBR_RS20780 overlap by 70 nucleotidesBBR_RS20780 and BBR_RS13555 overlap by 2 nucleotides BBR_RS13540: BBR_RS13540 - alcohol dehydrogenase, at 808,730 to 809,773 _RS13540 BBR_RS13545: BBR_RS13545 - DUF4143 domain-containing protein, at 810,002 to 811,363 _RS13545 BBR_RS13550: BBR_RS13550 - DUF47 domain-containing protein, at 811,472 to 812,089 _RS13550 BBR_RS20780: BBR_RS20780 - hypothetical protein, at 812,020 to 812,304 _RS20780 BBR_RS13555: BBR_RS13555 - excinuclease ABC subunit A, at 812,303 to 814,807 _RS13555 Position (kb) 810 811 812Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 809.088 kb on + strand, within BBR_RS13540at 809.108 kb on + strand, within BBR_RS13540at 809.120 kb on - strand, within BBR_RS13540at 809.156 kb on - strand, within BBR_RS13540at 809.184 kb on - strand, within BBR_RS13540at 809.210 kb on - strand, within BBR_RS13540at 809.227 kb on + strand, within BBR_RS13540at 809.278 kb on + strand, within BBR_RS13540at 809.291 kb on - strand, within BBR_RS13540at 809.324 kb on + strand, within BBR_RS13540at 809.324 kb on + strand, within BBR_RS13540at 809.339 kb on - strand, within BBR_RS13540at 809.359 kb on - strand, within BBR_RS13540at 809.417 kb on + strand, within BBR_RS13540at 809.417 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.469 kb on + strand, within BBR_RS13540at 809.537 kb on - strand, within BBR_RS13540at 809.549 kb on + strand, within BBR_RS13540at 809.555 kb on - strand, within BBR_RS13540at 809.625 kb on + strand, within BBR_RS13540at 809.636 kb on + strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.665 kb on + strand, within BBR_RS13540at 809.673 kb on - strandat 809.695 kb on + strandat 809.719 kb on - strandat 809.729 kb on - strandat 809.729 kb on - strandat 809.739 kb on + strandat 809.740 kb on + strandat 809.748 kb on - strandat 809.782 kb on - strandat 809.792 kb on - strandat 809.802 kb on - strandat 809.867 kb on + strandat 809.875 kb on - strandat 809.976 kb on - strandat 809.976 kb on - strandat 810.240 kb on - strand, within BBR_RS13545at 810.458 kb on - strand, within BBR_RS13545at 810.458 kb on - strand, within BBR_RS13545at 810.552 kb on - strand, within BBR_RS13545at 810.583 kb on + strand, within BBR_RS13545at 810.586 kb on - strand, within BBR_RS13545at 810.663 kb on + strand, within BBR_RS13545at 810.681 kb on - strand, within BBR_RS13545at 810.681 kb on - strand, within BBR_RS13545at 810.747 kb on - strand, within BBR_RS13545at 810.935 kb on + strand, within BBR_RS13545at 810.961 kb on + strand, within BBR_RS13545at 811.029 kb on - strand, within BBR_RS13545at 811.114 kb on - strand, within BBR_RS13545at 811.195 kb on - strand, within BBR_RS13545at 811.196 kb on + strand, within BBR_RS13545at 811.230 kb on + strandat 811.290 kb on - strandat 811.342 kb on + strandat 811.342 kb on + strandat 811.352 kb on - strandat 811.469 kb on + strandat 811.479 kb on - strandat 811.515 kb on - strandat 811.519 kb on + strandat 811.519 kb on + strandat 811.519 kb on + strandat 811.525 kb on - strandat 811.527 kb on - strandat 811.527 kb on - strandat 811.533 kb on - strandat 811.596 kb on + strand, within BBR_RS13550at 811.613 kb on + strand, within BBR_RS13550at 811.640 kb on + strand, within BBR_RS13550at 811.675 kb on - strand, within BBR_RS13550at 811.678 kb on + strand, within BBR_RS13550at 811.678 kb on + strand, within BBR_RS13550at 811.720 kb on + strand, within BBR_RS13550at 811.736 kb on + strand, within BBR_RS13550at 811.746 kb on + strand, within BBR_RS13550at 811.759 kb on - strand, within BBR_RS13550at 811.787 kb on - strand, within BBR_RS13550at 811.811 kb on + strand, within BBR_RS13550at 811.844 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.860 kb on - strand, within BBR_RS13550at 811.865 kb on - strand, within BBR_RS13550at 811.867 kb on - strand, within BBR_RS13550at 811.880 kb on - strand, within BBR_RS13550at 811.886 kb on - strand, within BBR_RS13550at 811.965 kb on + strand, within BBR_RS13550at 811.975 kb on + strand, within BBR_RS13550at 811.981 kb on - strand, within BBR_RS13550at 811.997 kb on + strand, within BBR_RS13550at 812.002 kb on + strand, within BBR_RS13550at 812.016 kb on + strand, within BBR_RS13550at 812.028 kb on + strandat 812.177 kb on + strand, within BBR_RS20780at 812.185 kb on + strand, within BBR_RS20780at 812.226 kb on - strand, within BBR_RS20780at 812.272 kb on + strand, within BBR_RS20780at 812.275 kb on + strand, within BBR_RS20780at 812.281 kb on - strandat 812.289 kb on + strandat 812.294 kb on + strandat 812.336 kb on - strandat 812.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without FolicAcid
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809,088 + BBR_RS13540 0.34 -0.1
809,108 + BBR_RS13540 0.36 -1.3
809,120 - BBR_RS13540 0.37 -0.6
809,156 - BBR_RS13540 0.41 -0.9
809,184 - BBR_RS13540 0.43 +0.3
809,210 - BBR_RS13540 0.46 -0.2
809,227 + BBR_RS13540 0.48 -1.0
809,278 + BBR_RS13540 0.52 -0.4
809,291 - BBR_RS13540 0.54 -2.4
809,324 + BBR_RS13540 0.57 +0.6
809,324 + BBR_RS13540 0.57 -2.6
809,339 - BBR_RS13540 0.58 -1.8
809,359 - BBR_RS13540 0.60 -0.7
809,417 + BBR_RS13540 0.66 -0.6
809,417 + BBR_RS13540 0.66 +1.2
809,453 + BBR_RS13540 0.69 +0.8
809,453 + BBR_RS13540 0.69 +0.2
809,453 + BBR_RS13540 0.69 -1.2
809,453 + BBR_RS13540 0.69 -1.4
809,469 + BBR_RS13540 0.71 +0.6
809,537 - BBR_RS13540 0.77 +0.3
809,549 + BBR_RS13540 0.78 -0.1
809,555 - BBR_RS13540 0.79 -0.7
809,625 + BBR_RS13540 0.86 +0.8
809,636 + BBR_RS13540 0.87 +0.4
809,661 - BBR_RS13540 0.89 -2.1
809,661 - BBR_RS13540 0.89 -1.4
809,661 - BBR_RS13540 0.89 +0.0
809,665 + BBR_RS13540 0.90 -0.1
809,673 - -0.9
809,695 + -0.1
809,719 - +0.9
809,729 - -1.4
809,729 - +0.1
809,739 + +0.9
809,740 + -0.4
809,748 - -0.6
809,782 - -0.5
809,792 - -2.3
809,802 - -0.5
809,867 + -0.0
809,875 - -1.5
809,976 - +0.6
809,976 - -0.6
810,240 - BBR_RS13545 0.17 -1.1
810,458 - BBR_RS13545 0.33 -4.3
810,458 - BBR_RS13545 0.33 -1.9
810,552 - BBR_RS13545 0.40 -1.2
810,583 + BBR_RS13545 0.43 -0.2
810,586 - BBR_RS13545 0.43 -3.6
810,663 + BBR_RS13545 0.49 -0.8
810,681 - BBR_RS13545 0.50 -2.3
810,681 - BBR_RS13545 0.50 -2.3
810,747 - BBR_RS13545 0.55 +0.2
810,935 + BBR_RS13545 0.69 -0.9
810,961 + BBR_RS13545 0.70 +0.4
811,029 - BBR_RS13545 0.75 -2.7
811,114 - BBR_RS13545 0.82 -1.6
811,195 - BBR_RS13545 0.88 -0.9
811,196 + BBR_RS13545 0.88 -2.6
811,230 + +0.7
811,290 - -2.7
811,342 + -1.1
811,342 + +0.1
811,352 - -2.7
811,469 + -1.1
811,479 - -1.6
811,515 - -0.8
811,519 + -0.8
811,519 + +0.6
811,519 + -0.0
811,525 - -0.1
811,527 - +0.2
811,527 - -1.1
811,533 - -0.3
811,596 + BBR_RS13550 0.20 -0.6
811,613 + BBR_RS13550 0.23 -0.1
811,640 + BBR_RS13550 0.27 +1.7
811,675 - BBR_RS13550 0.33 -0.2
811,678 + BBR_RS13550 0.33 -2.7
811,678 + BBR_RS13550 0.33 +0.4
811,720 + BBR_RS13550 0.40 -2.4
811,736 + BBR_RS13550 0.43 +0.7
811,746 + BBR_RS13550 0.44 +0.4
811,759 - BBR_RS13550 0.46 -0.7
811,787 - BBR_RS13550 0.51 -2.5
811,811 + BBR_RS13550 0.55 -0.4
811,844 + BBR_RS13550 0.60 +0.8
811,859 + BBR_RS13550 0.63 -0.0
811,859 + BBR_RS13550 0.63 -0.4
811,859 + BBR_RS13550 0.63 +0.3
811,860 - BBR_RS13550 0.63 -3.1
811,865 - BBR_RS13550 0.64 -0.6
811,867 - BBR_RS13550 0.64 -2.1
811,880 - BBR_RS13550 0.66 +0.5
811,886 - BBR_RS13550 0.67 -0.8
811,965 + BBR_RS13550 0.80 +0.3
811,975 + BBR_RS13550 0.81 +0.3
811,981 - BBR_RS13550 0.82 +0.4
811,997 + BBR_RS13550 0.85 +0.8
812,002 + BBR_RS13550 0.86 +0.4
812,016 + BBR_RS13550 0.88 -0.2
812,028 + +0.6
812,177 + BBR_RS20780 0.55 -0.5
812,185 + BBR_RS20780 0.58 +0.7
812,226 - BBR_RS20780 0.72 -1.7
812,272 + BBR_RS20780 0.88 +1.3
812,275 + BBR_RS20780 0.89 -0.5
812,281 - +0.9
812,289 + -0.4
812,294 + +1.9
812,336 - -0.2
812,359 + -0.3

Or see this region's nucleotide sequence