Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29485 and AO356_29490 are separated by 152 nucleotides AO356_29490 and AO356_29495 are separated by 64 nucleotides
AO356_29485: AO356_29485 - LysR family transcriptional regulator, at 6,859,185 to 6,860,078
_29485
AO356_29490: AO356_29490 - ArsR family transcriptional regulator, at 6,860,231 to 6,860,533
_29490
AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572
_29495
Position (kb)
6860
6861 Strain fitness (log2 ratio)
-2
-1
0
1 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.702 kb on - strand, within AO356_29485 at 6859.702 kb on - strand, within AO356_29485 at 6859.705 kb on + strand, within AO356_29485 at 6859.706 kb on - strand, within AO356_29485 at 6859.841 kb on + strand, within AO356_29485 at 6859.842 kb on - strand, within AO356_29485 at 6860.002 kb on + strand at 6860.047 kb on + strand at 6860.048 kb on - strand at 6860.163 kb on + strand at 6860.185 kb on + strand at 6860.185 kb on + strand at 6860.185 kb on + strand at 6860.186 kb on - strand at 6860.239 kb on - strand at 6860.239 kb on - strand at 6860.471 kb on + strand, within AO356_29490 at 6860.471 kb on + strand, within AO356_29490 at 6860.474 kb on + strand, within AO356_29490 at 6860.475 kb on - strand, within AO356_29490 at 6860.542 kb on + strand at 6860.543 kb on - strand at 6860.595 kb on - strand at 6860.595 kb on - strand at 6860.597 kb on + strand at 6860.597 kb on + strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.615 kb on + strand at 6860.615 kb on + strand at 6860.616 kb on - strand at 6860.616 kb on - strand at 6860.856 kb on + strand, within AO356_29495 at 6860.889 kb on + strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6861.177 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.372 kb on + strand, within AO356_29495 at 6861.373 kb on - strand, within AO356_29495 at 6861.469 kb on - strand, within AO356_29495
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 6,859,386 + AO356_29485 0.22 +0.2 6,859,386 + AO356_29485 0.22 -0.2 6,859,386 + AO356_29485 0.22 +0.6 6,859,386 + AO356_29485 0.22 -2.1 6,859,386 + AO356_29485 0.22 -0.5 6,859,702 - AO356_29485 0.58 +0.3 6,859,702 - AO356_29485 0.58 -0.3 6,859,705 + AO356_29485 0.58 -0.1 6,859,706 - AO356_29485 0.58 +0.8 6,859,841 + AO356_29485 0.73 -0.1 6,859,842 - AO356_29485 0.73 +0.1 6,860,002 + +0.5 6,860,047 + +0.2 6,860,048 - +0.3 6,860,163 + +0.7 6,860,185 + +0.4 6,860,185 + +0.7 6,860,185 + -0.4 6,860,186 - +0.7 6,860,239 - -0.2 6,860,239 - +0.6 6,860,471 + AO356_29490 0.79 +0.0 6,860,471 + AO356_29490 0.79 +0.2 6,860,474 + AO356_29490 0.80 -0.3 6,860,475 - AO356_29490 0.81 +0.7 6,860,542 + +0.6 6,860,543 - +0.2 6,860,595 - +1.1 6,860,595 - +0.4 6,860,597 + +0.1 6,860,597 + -0.5 6,860,598 - -0.0 6,860,598 - +0.2 6,860,598 - +0.4 6,860,598 - -0.0 6,860,615 + +0.7 6,860,615 + +1.6 6,860,616 - -0.2 6,860,616 - +0.4 6,860,856 + AO356_29495 0.26 +0.2 6,860,889 + AO356_29495 0.30 +1.1 6,860,890 - AO356_29495 0.30 +0.6 6,860,890 - AO356_29495 0.30 +0.8 6,861,177 + AO356_29495 0.59 -0.5 6,861,192 + AO356_29495 0.61 +0.2 6,861,192 + AO356_29495 0.61 -0.3 6,861,192 + AO356_29495 0.61 -0.1 6,861,193 - AO356_29495 0.61 -2.1 6,861,193 - AO356_29495 0.61 +0.7 6,861,193 - AO356_29495 0.61 +0.2 6,861,372 + AO356_29495 0.79 -0.2 6,861,373 - AO356_29495 0.79 -0.3 6,861,469 - AO356_29495 0.89 +0.2
Or see this region's nucleotide sequence